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Recent Replies
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Okay, that shows us the problem, but not what we need to solve it.
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In the case of MAF = 0.5, I think A1 is still the minor allele. You can check the discussion in this [link][1].
[1]: https://groups.goo…
Comment: Easy way to find out which allele is minor allele from bed file?
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Yes, but I think the problem is what to do when MAF = 0.5
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In Plink, A1 is usually a minor allele and A2 a major allele.
.frq (basic allele frequency report)
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I briefly looked at those genes on a genome browser -- there are a lot of repeat elements in those genes, meaning a lot of counts assigned …
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Thank you for sharing.
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What is `stringie.sh`? Try `./stringtie.sh -h` and then `more stringtie.sh`.
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You can copy and paste your code and then use `101010` button in the edit window to format it as text to keep it monospaced.
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