updated 9 hours ago by
Mohamed
•
0
•
written 8 months ago by
vincenthus
▴
70
19
votes
15
replies
2.3k
views
17
votes
10
replies
7.3k
views
7 follow
4
votes
9
replies
634
views
updated 10 hours ago by
marco.barr
▴
130
•
written 6 days ago by
diqixiaoyaoer
▴
20
4
votes
10
replies
848
views
3
votes
5
replies
407
views
5 hours ago by
beantkapoor16
▴
10
2
votes
3
replies
329
views
2
votes
0
replies
42
views
4 hours ago by
Rafael Soler
★
1.2k
2
votes
1
reply
75
views
2
votes
5
replies
366
views
updated just now by
jared.andrews07
★
17k
•
written 19 days ago by
Oburah
•
0
2
votes
3
replies
1.0k
views
2
votes
4
replies
201
views
1
vote
2
replies
72
views
1
vote
2
replies
167
views
21 hours ago by
ojaswinipandey
•
0
1
vote
8
replies
445
views
updated 11 hours ago by
marco.barr
▴
130
•
written 2 days ago by
Ghada
•
0
1
vote
2
replies
224
views
updated 10 hours ago by
colindaven
6.4k
•
written 1 day ago by
Dr.
•
0
1
vote
1
reply
695
views
1
vote
3
replies
519
views
1
vote
6
replies
355
views
1
vote
4
replies
261
views
1
vote
2
replies
353
views
0
votes
0
replies
51
views
0
votes
0
replies
10
views
30 minutes ago by
Arton
▴
10
0
votes
0
replies
73
views
updated 23 hours ago by
Ram
44k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
111
views
updated 6 hours ago by
WouterDeCoster
47k
•
written 1 day ago by
safeassli
▴
10
0
votes
1
reply
95
views
updated 6 hours ago by
Nitin Narwade
★
1.6k
•
written 16 hours ago by
eae6d2e7
•
0
0
votes
3
replies
1.7k
views
updated 6 hours ago by
Arthur
•
0
•
written 3.0 years ago by
giulia.trauzzi
▴
10
0
votes
0
replies
43
views
6 hours ago by
Ayda Ecem
•
0
0
votes
3
replies
101
views
0
votes
2
replies
158
views
5 hours ago by
Bjorn
•
0
0
votes
5
replies
345
views
21 hours ago by
mavy
▴
10
0
votes
1
reply
71
views
0
votes
0
replies
45
views
4 hours ago by
Fabio Marroni
★
3.0k
0
votes
3
replies
217
views
updated 22 hours ago by
marco.barr
▴
130
•
written 1 day ago by
Mohamed Samir
▴
20
0
votes
0
replies
117
views
updated 23 hours ago by
Ram
44k
•
written 2 days ago by
Rodolfo Adrián
•
0
0
votes
0
replies
43
views
0
votes
0
replies
36
views
0
votes
1
reply
43
views
updated 2 hours ago by
Pierre Lindenbaum
161k
•
written 3 hours ago by
mrk
•
0
0
votes
2
replies
102
views
0
votes
2
replies
168
views
updated 2 hours ago by
geneontologyhelp
▴
400
•
written 1 day ago by
Pegasus
▴
100
0
votes
4
replies
145
views
2 hours ago by
Zhenyu Zhang
★
1.2k
0
votes
2
replies
77
views
0
votes
0
replies
57
views
0
votes
0
replies
6
views
0
votes
1
reply
84
views
updated 11 hours ago by
Pierre Lindenbaum
161k
•
written 12 hours ago by
Peter Chung
▴
200
0
votes
0
replies
143
views
updated 23 hours ago by
Ram
44k
•
written 1 day ago by
JorgeVallejo
▴
20
0
votes
0
replies
55
views
12 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
64
views
17 hours ago by
Christopher
•
0
Recent Votes
Recent Locations •
All
Greenland, just now
United States, 1 minute ago
United States, 2 minutes ago
Brazil, 3 minutes ago
College Station, TX, 3 minutes ago
Memphis, TN, 4 minutes ago
Bologna, 11 minutes ago
Recent Awards •
All
Scholar to
Ashutosh Pandey
12k
Popular Question to
O.rka
▴
720
Popular Question to
natasha.sernova
★
4.0k
Popular Question to
Picasa
▴
640
Popular Question to
Rafael Soler
★
1.2k
Recent Replies
Comment: Super ehancers
by
jared.andrews07
★
17k
That is not valid GFF format, so that is probably going to be problematic. See the [GFF spec](https://github.com/The-Sequence-Ontology/Spec…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
finch
•
0
Hey! I had this issue and I think I can help- could you take a screenshot of the .txt file opened in the notepad?
Answer: Is it possible to run CibersortX with a very small number of samples?
by
finch
•
0
Hi! I had a very similar issue and it's likely not at all related to your number of samples but to the format of your mixture file! Ciberso…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Ram
44k
You cannot *convert* a VCF to a FASTA as they have vastly different information content. Please explain your process - what exactly do you …
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Shukai
•
0
Thank you Ram for the comments! Noted for future posts.
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
I am looking for diagrams, and step-by-step instructions of how to build my pipelines.
I think the github is only helpful if you are a wdl…
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
oh, this is helpful. Thanks.
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Ram
44k
1. You can edit your post and add relevant details. There is no need to add separate comments with relevant details especially when it's no…
Answer: Functional enrichment analysis for unique gene IDs
by
geneontologyhelp
▴
400
If you are looking at producing GO annotations, we currently only recommend InterProScan, and basically only for novel organisms or where t…
Answer: Question about samtools view flags (paired reads vs. properly paired reads)
by
Pierre Lindenbaum
161k
paired reads = the experiment was a paired end assay: each fragment was sequenced on 5' and 3', two FASTQ files are generated by the seque…
Answer: z-score of gene set
by
Matthias Zepper
4.6k
The z-score is a measure of how many standard deviations a particular data point is from the mean of a distribution. A positive z-score ind…
Answer: converting transcript IDs (Ensembl) to gene symbols in R
by
bk11
★
2.5k
You can do as following:
library(biomaRt)
# Set up the Ensembl BioMart connection
ensembl <- useEnsembl(biomart = "genes",…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Pierre Lindenbaum
161k
well you try to use FastaAlternateReferenceMaker https://gatk.broadinstitute.org/hc/en-us/articles/360037594571-FastaAlternateReferenceMak…
Comment: z-score of gene set
by
bk11
★
2.5k
Can you please tell us what will be your propose of z-score calculation?
Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
by
DBScan
▴
300
I think I did it once, but why would you use GATK with DRAGEN gVCF files? If you have a DRAGEN, the iterative gVCF Genotyper does a much fa…
Traffic: 2886 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6