updated 4 days ago by
thomas.heigl.ibk
•
0
•
written 12.8 years ago by
Bioscientist
★
1.7k
29
votes
28
replies
34k
views
11 follow
16
votes
12
replies
7.4k
views
10 follow
3
votes
8
replies
6.6k
views
7 follow
updated 4 days ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
1
vote
11
replies
5.5k
views
updated 1 day ago by
guanghao
•
0
•
written 6.1 years ago by
vivekruhela
▴
20
4
votes
6
replies
3.9k
views
updated 6 days ago by
Andres
▴
20
•
written 9.6 years ago by
hermathena
▴
40
4
votes
6
replies
3.8k
views
2
votes
2
replies
2.6k
views
1
vote
14
replies
2.4k
views
updated 4 days ago by
GenoMax
142k
•
written 4.5 years ago by
Swimming bird
▴
20
4
votes
9
replies
2.1k
views
6 follow
38
votes
24
replies
2.0k
views
10 follow
2
votes
2
replies
1.8k
views
updated 3 days ago by
e.r.zakiev
▴
210
•
written 3.8 years ago by
n.anuragsharma
▴
40
5
votes
6
replies
1.8k
views
4
votes
15
replies
1.6k
views
updated 3 days ago by
Gordon Smyth
★
7.1k
•
written 4 months ago by
raplayer
▴
10
1
vote
2
replies
1.1k
views
1 day ago by
Zhenyu Zhang
★
1.2k
3
votes
0
replies
1.1k
views
1 day ago by
Ibrahim Tanyalcin
★
1.2k
1
vote
4
replies
1.1k
views
1
vote
10
replies
838
views
updated 23 hours ago by
antonio.spl
•
0
•
written 3 months ago by
microorganism_001
▴
30
2
votes
3
replies
803
views
updated 2 days ago by
vjanve
•
0
•
written 7 months ago by
mateomejias
•
0
0
votes
1
reply
782
views
0
votes
2
replies
728
views
updated 4 days ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
0
votes
1
reply
681
views
updated 6 days ago by
Ram
43k
•
written 6 days ago by
Dr Huma Naz
•
0
10
votes
10
replies
617
views
updated 18 hours ago by
t.montserrat.ayuso
▴
10
•
written 7 days ago by
carolofharvest
▴
30
1
vote
6
replies
617
views
updated 11 hours ago by
GenoMax
142k
•
written 5 months ago by
michael.flower.14
▴
180
0
votes
1
reply
588
views
5
votes
5
replies
587
views
updated 3 days ago by
Mbofire
•
0
•
written 12 days ago by
Ming Tommy Tang
★
3.9k
0
votes
7
replies
554
views
0
votes
1
reply
545
views
updated 4 days ago by
clairechung112
•
0
•
written 2.2 years ago by
Bogdan
★
1.4k
0
votes
10
replies
531
views
5
votes
6
replies
525
views
9
votes
10
replies
515
views
6 follow
updated 4 days ago by
Zamin Iqbal
▴
20
•
written 5 days ago by
nicole.kavanagh
•
0
0
votes
1
reply
511
views
1
vote
8
replies
483
views
6 days ago by
marco.barr
▴
90
2
votes
8
replies
475
views
0
votes
8
replies
444
views
1
vote
7
replies
443
views
0
votes
3
replies
415
views
6 days ago by
Assa Yeroslaviz
★
1.8k
0
votes
1
reply
399
views
0
votes
6
replies
399
views
3
votes
2
replies
385
views
3
votes
4
replies
384
views
updated 7 hours ago by
Gordon Smyth
★
7.1k
•
written 3 days ago by
SHN
▴
40
5
votes
4
replies
381
views
0
votes
5
replies
377
views
0
votes
5
replies
364
views
updated 8 hours ago by
Chris Dean
▴
390
•
written 4 days ago by
sovrappensiero
▴
90
0
votes
5
replies
348
views
6 follow
updated 3 days ago by
b.contreras.moreira
▴
180
•
written 4 days ago by
JH
•
0
1
vote
6
replies
345
views
0
votes
5
replies
332
views
updated 3 days ago by
chrchang523
10k
•
written 3 days ago by
curious
▴
750
1
vote
5
replies
332
views
3 days ago by
Riccardo
▴
10
3
votes
3
replies
330
views
1
vote
4
replies
328
views
updated 2 days ago by
Mensur Dlakic
★
27k
•
written 3 days ago by
Ruqaiya
•
0
1
vote
5
replies
327
views
Recent Locations •
All
Bologna, 2 minutes ago
United States, 6 minutes ago
United States, 7 minutes ago
South Korea, 7 minutes ago
South Korea, 10 minutes ago
South Korea, 11 minutes ago
South Korea, 13 minutes ago
Recent Awards •
All
Popular Question to
Scott McKay
▴
30
Popular Question to
A. Domingues
★
2.7k
Popular Question to
JACKY
▴
140
Popular Question to
bhumm
▴
140
Teacher to
Matthias Zepper
4.6k
Popular Question to
sidrah.maryam
▴
50
Recent Replies
Answer: Bioinformatics Analyst - Laboratory Medicine and Pathology
by
Xiaofen
•
0
I'm having a problem and I can't find the button to post, how do you post?
Comment: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
by
MICOS
•
0
Contest question details:
**To effectively address the accuracy and efficiency issues of clustering algorithms used for spatial transcript…
Comment: HCL database download
by
sooni
▴
20
I would like to download top markers for each subpopulation data. Is there no way? It seems different from the DGE data.
Comment: Understanding STAR output (Aligned.out.sam file)
by
GenoMax
142k
Refer to SAM alignment format: https://samtools.github.io/hts-specs/SAMv1.pdf
Check section 1.4.
Answer: Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genom
by
LChart
3.9k
Step 1: Go to TCGA in the GDC and open the Cohort Builder
https://portal.gdc.cancer.gov/analysis_page?app=CohortBuilder&tab=general
Step …
Comment: Where to get the following bed file?
by
GenoMax
142k
SeqCap kits are discontinued. If you don't find the said file your will need to email Roche Support per this page: https://sequencing.roche…
Answer: Where to get the following bed file?
by
LChart
3.9k
UCSC maintains a list of exome probe sets and targets. You could check there:
https://hgdownload.soe.ucsc.edu/gbdb/hg19/exomeProbesets/
Comment: How to compute TPM normalized values for TCGA miRNA data?
by
Ngrin
•
0
Yes, I found some similar ideas on biostar repository. So you think the authors have done something wrong? And I should only consider CPM?
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴
390
It is difficult to answer how they were able to identify *S. hominis* without seeing the code or paper. To address your second question, i…
Comment: Problem with Seurat package in PercentageFeatureSet function
by
bk11
★
2.4k
Did you check where the `features.tsv.gz` file had Gene IDs or Ensembl IDs?
Answer: How to compute TPM normalized values for TCGA miRNA data?
by
dsull
★
6.0k
TPM is irrelevant for miRNA-seq; CPM works fine.
TPM tries to adjust for length effects by dividing by gene length (e.g. reducing the im…
Comment: Applying the metacell2 algorithm using python
by
Wayne
★
2.0k
"I'm also unsure what qualifies as a lateral gene."
The [README where you reference](https://metacells.readthedocs.io/en/latest/readme.htm…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴
90
Ah, yes this makes sense! I knew this was an issue with, say, using kraken2 on shotgun metagenomic reads, but I don't have a lot of experi…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Thank you. Maybe it's best to confirm with the authors about how they're getting responder/non-responder labels. I'll do that now.
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴
390
If you sequenced a short hypervariable region, most of your sequence reads will not be able to be assigned to the species level. One possi…
Traffic: 1555 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6