updated 1 day ago by
Pierre Lindenbaum
161k
•
written 7 days ago by
Maria
•
0
1
vote
8
replies
772
views
1
vote
10
replies
914
views
2 days ago by
DKA
▴
40
0
votes
2
replies
798
views
0
votes
5
replies
292
views
updated 1 day ago by
GenoMax
141k
•
written 2 days ago by
Bertalan_Takacs
▴
90
0
votes
0
replies
130
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
glaciya2018
•
0
0
votes
0
replies
112
views
updated 23 hours ago by
Ram
43k
•
written 2 days ago by
David Langenberger
11k
0
votes
0
replies
259
views
0
votes
13
replies
3.5k
views
6 follow
updated 2 days ago by
drstalinantony28
•
0
•
written 2.2 years ago by
ymj
▴
10
0
votes
1
reply
141
views
updated 2 days ago by
Sofia
•
0
•
written 2 days ago by
mawigoj318
•
0
0
votes
0
replies
132
views
2 days ago by
salias
•
0
4
votes
7
replies
415
views
0
votes
4
replies
250
views
1 day ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
112
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
newuser2024
•
0
1
vote
2
replies
202
views
1 day ago by
ahmad.sajad4541
•
0
0
votes
0
replies
109
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
94
views
0
votes
2
replies
213
views
2
votes
2
replies
202
views
updated 2 days ago by
analyst
▴
30
•
written 2 days ago by
lorena9132
•
0
0
votes
0
replies
104
views
7
votes
2
replies
263
views
updated 2 days ago by
geneontologyhelp
▴
390
•
written 4 days ago by
catherine.teyssier
•
0
1
vote
1
reply
202
views
updated 2 days ago by
Istvan Albert
100k
•
written 4 days ago by
Abeer
•
0
2
votes
4
replies
290
views
0
votes
1
reply
146
views
updated 2 days ago by
Mensur Dlakic
★
27k
•
written 2 days ago by
benguyarenbeyaz98
•
0
0
votes
2
replies
237
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
v.berriosfarias
▴
140
3
votes
1
reply
217
views
1
vote
1
reply
183
views
updated 2 days ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
Biostar
2.7k
1
vote
1
reply
143
views
updated 2 days ago by
GenoMax
141k
•
written 3 days ago by
heelpPlease
•
0
2
votes
9
replies
822
views
0
votes
11
replies
476
views
0
votes
1
reply
150
views
updated 3 days ago by
bk11
★
2.4k
•
written 3 days ago by
alphaflylizard
•
0
5
votes
3
replies
226
views
0
votes
3
replies
236
views
updated 2 days ago by
Istvan Albert
100k
•
written 3 days ago by
Dylan
•
0
2
votes
5
replies
279
views
4
votes
11
replies
521
views
8
votes
16
replies
780
views
0
votes
0
replies
94
views
3 days ago by
ohtang7
▴
40
3
votes
0
replies
115
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
carlopecoraro2
★
2.5k
2
votes
2
replies
418
views
updated 3 days ago by
Pierre Lindenbaum
161k
•
written 8 months ago by
AshleeThomson
▴
80
0
votes
1
reply
156
views
8
votes
5
replies
5.2k
views
0
votes
5
replies
294
views
5
votes
4
replies
624
views
2 days ago by
kirillkirilenko
▴
40
0
votes
0
replies
88
views
0
votes
3
replies
368
views
0
votes
0
replies
97
views
1
vote
3
replies
210
views
0
votes
3
replies
209
views
1
vote
1
reply
155
views
updated 3 days ago by
Michael
54k
•
written 3 days ago by
michael.flower.14
▴
180
1
vote
3
replies
250
views
2 days ago by
Art1ess
•
0
0
votes
1
reply
132
views
updated 3 days ago by
bk11
★
2.4k
•
written 3 days ago by
Susmita Mandal
▴
110
Recent Votes
Recent Locations •
All
Chile, just now
United States, 3 minutes ago
Mexico, 5 minutes ago
Brazil, 7 minutes ago
Czechia, 7 minutes ago
Canada, 9 minutes ago
Mexico, 10 minutes ago
Recent Awards •
All
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Recent Replies
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Traffic: 2647 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6