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35 results • Page
1 of 1
Sort: Views
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Views
Votes
Replies
64
votes
25
replies
57k
views
22 follow
Download All The Bacterial Genomes From Ncbi
ncbi
updated 12 hours ago by
GenoMax
142k • written 11.4 years ago by
rehma.ar
▴ 290
3
votes
10
replies
5.2k
views
6 follow
txt file to bigwig
MEME
bigwig
updated 7 hours ago by
ATpoint
82k • written 8.6 years ago by
tanni93
▴ 50
1
vote
2
replies
3.8k
views
How can run cd-hit-est with a clstr threshold less than 0.8?
cd-hit
cluster
updated 19 hours ago by
Asaf
10k • written 6.3 years ago by
m.koohi.m
▴ 120
5
votes
10
replies
3.2k
views
Delete some INFO header lines and columns data
vcf
bash
vcftools
updated 2 hours ago by
tomas4482
▴ 400 • written 2.3 years ago by
pablo.goiko
• 0
8
votes
10
replies
3.2k
views
8 follow
Venter Genome Vcf
vcf
updated 8 hours ago by
Jeremy Leipzig
22k • written 10.1 years ago by
win
▴ 980
2
votes
6
replies
2.2k
views
Tool:
Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID
biomart
annotation
Ensembl
updated 13 hours ago by
Mike Smith
★ 2.0k • written 2.8 years ago by
Shred
★ 1.4k
2
votes
4
replies
1.1k
views
samtools mpileup error - 1 samples in 1 input files
samtools
BAM
mpileup
SAM
updated 10 hours ago by
Damla
• 0 • written 2.4 years ago by
joseph.kelly.94
▴ 10
3
votes
3
replies
818
views
Cut&Run and heatmap
and
bowtie2
MACS2
updated 9 hours ago by
sogand
• 0 • written 13 months ago by
qudrat.nii
▴ 10
2
votes
4
replies
353
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
9 hours ago by
Pegasus
▴ 100
2
votes
3
replies
314
views
How do we do quantification using stringtie merge option for all the merged samples generated.
stringtie
quantification
19 hours ago by
Varsha
• 0
1
vote
2
replies
258
views
Failed to download data from EBI with ascp
EBI
aspera
updated 22 hours ago by
孝中
• 0 • written 6 weeks ago by
biock
▴ 60
0
votes
3
replies
255
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
Pseudobulk
single-cell
DESeq2
scRNA
updated 15 hours ago by
ATpoint
82k • written 2 days ago by
Sara
▴ 30
4
votes
2
replies
236
views
Number of non-ATCG nucleotides replaced by Salmon
rna-seq
stringtie
salmon
updated 2 hours ago by
Ram
44k • written 3 days ago by
Tonya S.
▴ 10
0
votes
2
replies
227
views
perl Error - needLargeMem Bigwig
Bigwig
perl
mitosalt
17 hours ago by
marco.barr
▴ 130
0
votes
2
replies
225
views
Tools for chromosomal aneuploidy detection
genetics
aneuploidy
NGS
human
updated 19 hours ago by
a.alnawfal.1992
▴ 260 • written 4 days ago by
adarsh_pp
▴ 40
3
votes
4
replies
207
views
Invalid CIGAR after using bam clipOverlap
validatesamfile
cigar
bam
clipoverlap
21 hours ago by
MboiTui
▴ 20
0
votes
1
reply
205
views
BAM to Bedgraph creating an empty file
Bisulfite-seq
bismark
updated 16 hours ago by
raphael.B
▴ 520 • written 3 days ago by
irebekah.c
• 0
0
votes
1
reply
175
views
How to decrease the motif score?
scores
Motif
updated 20 hours ago by
ATpoint
82k • written 2 days ago by
Hadia
• 0
1
vote
2
replies
161
views
Help me with Heatmap
RNA-seq
R
DESeq2
updated 2 hours ago by
Ram
44k • written 14 hours ago by
vmpsb
• 0
2
votes
2
replies
122
views
How do i calculate the mean of triplicates in a data.frame based on pattern?
tidyverse
r
updated 2 hours ago by
Ram
44k • written 15 hours ago by
Assa Yeroslaviz
★ 1.9k
0
votes
1
reply
114
views
Salmon vs Kallisto vs RSEM
RSEM
quantification
kallisto
Salmon
updated 2 hours ago by
Ram
44k • written 14 hours ago by
Mohamed Abderrahmane
▴ 20
1
vote
1
reply
104
views
Search within posts based on tags using the Biostars API
api
meta
updated 2 hours ago by
Ram
44k • written 20 hours ago by
Bálint
▴ 10
0
votes
0
replies
103
views
News:
Online course: Population Genomic Inference from Low-Coverage Whole-Genome Sequencing Data
Genotype-Likelihoods
Low-Coverage
Population-Genomics
ANGSD
updated 2 hours ago by
Ram
44k • written 1 day ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
98
views
identify the coordinate for coding and non_coding region.
coding
non_coding
11 hours ago by
Ghada
• 0
0
votes
0
replies
86
views
virus genome annotation
annotation
gff3
consensus
NCBI
coding_regions
12 hours ago by
Ghada
• 0
0
votes
0
replies
83
views
Determining rs ids from SNP HGV base ID?
rsID
HGV
SNP
updated 2 hours ago by
Ram
44k • written 1 day ago by
Katherine
• 0
0
votes
0
replies
79
views
Subset of Transcripts- How do I proceed with it?
Stringite
Quantification
19 hours ago by
Varsha
• 0
0
votes
1
reply
78
views
Help with proteomics downstream analysis
mass-spectrometry
proteomics
updated 2 hours ago by
Ram
44k • written 12 hours ago by
Álvaro
• 0
0
votes
1
reply
67
views
Error with Pheatmap ()
r
deseq2
updated 2 hours ago by
Ram
44k • written 6 hours ago by
vmpsb
• 0
0
votes
0
replies
66
views
PyRMD
Virtual
Screening
learning
cheminformatics
machine
21 hours ago by
s
• 0
0
votes
1
reply
41
views
Salmon ~ Effective Length
Salmon
updated 1 hour ago by
Rob
6.6k • written 2 hours ago by
chrisk
• 0
0
votes
0
replies
37
views
The number of region with the motif sequence is different between HOMER outputs
findMotifsGenome
HOMER
annotatePeaks
6 hours ago by
Aki
▴ 20
0
votes
0
replies
36
views
Calculating F_IS, F_IT on ancient DNA
adna
6 hours ago by
devenvyas
▴ 740
0
votes
0
replies
28
views
How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Package?
multi-omics
CNV
R
updated 2 hours ago by
Ram
44k • written 4 hours ago by
Ngrin
• 0
0
votes
0
replies
22
views
Funcotator gnomAD incoherent number of output fields
gatk
fields
gnomAD
Funcotator
2 hours ago by
jaime alvarez
▴ 30
35 results • Page
1 of 1
Recent Votes
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Comment: bbmerge (bbmap) ~ error with insert size file output
Comment: bbmerge (bbmap) ~ error with insert size file output
Answer: Help me with simple data for RNA seq
A: Most Popular and fancy SNP analysis tools Comparison: Plink, SNPassoc, SNPRelate
Most Popular and fancy SNP analysis tools Comparison: Plink, SNPassoc, SNPRelate
GWAS analysis tool
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Recent Replies
Answer: Salmon ~ Effective Length
by
Rob
6.6k
Salmon will compute the fragment length distribution based on the (probabilistically weighted) implied distance between the fragment ends g…
Comment: Error with Pheatmap ()
by
Ram
44k
Show us the output to ```r mat.z[1:10,1:10] any(is.infinite(mat.z)) ```
Answer: Search within posts based on tags using the Biostars API
by
Ram
44k
AFAIK there's a POST-based tag API but it has problems. I created an issue on GitHub a while ago on this topic: https://github.com/ialbert/…
Comment: Delete some INFO header lines and columns data
by
tomas4482
▴ 400
This code will NOT work. Please use `bcftools annotate -x ^INFO/RPBZ,INFO/MQBZ,INFO/BQBZ in.vcf.gz > out.vcf` instead. Prior to this st…
Answer: Help with proteomics downstream analysis
by
Nat.Nataren
▴ 10
I would be contacting the company as a start, and getting access to your raw data.
Comment: txt file to bigwig
by
ATpoint
82k
Please stop asking questions in existing threads. Delete these two comments and open a new question with all the necessary details to under…
Comment: Venter Genome Vcf
by
Jeremy Leipzig
22k
there are some violations in this VCF: - Invalid count number, with fixed count the number should be 1 or higher: key=INFO name=TSA type=St…
Comment: Cut&Run and heatmap
by
sogand
• 0
Hi all, I am new to cut&run or any peak-related analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt …
Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴ 100
Since the locus-tags are unclassified, I used the CDS instead of the locus-tags to retrive their ensembl IDs using ensembl bacteria website…
Comment: samtools mpileup error - 1 samples in 1 input files
by
Damla
• 0
Could you find a solution to your problem?
Comment: txt file to bigwig
by
sogand
• 0
Hi all, I am new to these kind of analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt files that are r…
Answer: Help me with Heatmap
by
MolGeek
▴ 50
Hello! So, what is the correct design ? You will have to ask yourself, what do you want to compare? WT vs mut? If so it will be strain. 2…
Answer: Help me with simple data for RNA seq
by
swbarnes2
14k
1) you have to say what question you are actually asking. There are few different designs that would address different questions. 2) work…
Comment: identify the coordinate for coding and non_coding region.
by
Ghada
• 0
mmmm I am not sure. This is how I generate my consnsus sequence # Get consensus fastq file samtools mpileup -uf KT992094.1.fasta…
Comment: identify the coordinate for coding and non_coding region.
by
GenoMax
142k
Why do you have those N's at the beginning of the sequence? If the remainder of the sequence matches 100% then the initial N's may be wrong…
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