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GWAS analysis tool

I am going to start GWAS analysis for human genome. Any recommendation which tools should I use? Also, it would be great if you could please send me a link to tutorial with mock data so I can practice first before working on the real data.

I am new to GWAS analysis so please help me. Many thanks in advance.

snp r genome
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updated by breckuh • breckuh • written by arshad1292 • arshad1292

Many thanks for your response. I have been busy and now starting to work on this. Cheers!

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written by arshad1292 • arshad1292

2 answers

I would recommend the book "Genome-Wide Association Studies and Genomic Predictions". It was published in 2013, so I thought it might be outdated given the newness and pace of the GWAS field, but I've found many of the chapters to be highly relevant, and they have saved me a lot of time with my first GWAS project, particularly the chapters related to quality control and plink.

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written by breckuh • breckuh

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