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731 results • Page 2 of 15
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4
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661
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News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
11 months ago by David Langenberger 11k
4
votes
3
replies
1.1k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
4
votes
2
replies
3.0k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
4
votes
2
replies
612
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
8 months ago by PeterC_NCBI ▴ 410
4
votes
0
replies
1.0k
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 11 months ago by 43k • written 5.8 years ago by ▴ 40
3
votes
1
reply
1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
3
votes
1
reply
845
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 11 months ago by 43k • written 5.0 years ago by ▴ 150
3
votes
0
replies
1.9k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 11 months ago by 43k • written 3.9 years ago by 142k
3
votes
0
replies
815
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
votes
0
replies
1.3k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.2k
3
votes
2
replies
1.0k
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.4 years ago by • 0
3
votes
2
replies
698
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
3
votes
2
replies
733
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
7 weeks ago by Johannes W. Dietrich • 0
3
votes
0
replies
1.3k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
3
votes
1
reply
2.0k
views
News: Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen assembly RNA-Seq gene
updated 12 months ago by 43k • written 6.3 years ago by ▴ 110
3
votes
1
reply
1.2k
views
News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 11 months ago by 43k • written 5.3 years ago by ▴ 60
3
votes
0
replies
582
views
News: gnomAD v4 released
gnomad
6 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
1.4k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
3
votes
0
replies
1.1k
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 11 months ago by 43k • written 5.8 years ago by 23k
3
votes
0
replies
1.4k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 12 months ago by 43k • written 6.2 years ago by 142k
3
votes
1
reply
955
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
3
votes
1
reply
972
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
3
votes
0
replies
241
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 21 days ago by 43k • written 22 days ago by ▴ 60
3
votes
0
replies
798
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 11 months ago by 43k • written 4.5 years ago by 11k
3
votes
1
reply
962
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 11 months ago by 43k • written 5.3 years ago by ▴ 60
3
votes
0
replies
1.1k
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 12 months ago by 43k • written 6.1 years ago by 26k
3
votes
0
replies
312
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
3
votes
2
replies
770
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
154
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 24 days ago by 43k • written 24 days ago by ★ 2.5k
3
votes
2
replies
1.2k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 12 months ago by 43k • written 6.0 years ago by ★ 3.0k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
3
votes
0
replies
713
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 11 months ago by 43k • written 4.7 years ago by 6.6k
2
votes
1
reply
1.1k
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.7 years ago by ▴ 150
2
votes
0
replies
856
views
News: The BioCompute Object App-a-thon is now live!
app-a-thon pipeline precisionFDA
updated 11 months ago by 43k • written 5.0 years ago by ▴ 150
2
votes
0
replies
1.1k
views
News: Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training course ensembl workshop
updated 11 months ago by 43k • written 5.8 years ago by ▴ 330
2
votes
0
replies
138
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
5 weeks ago by Transmitting Science communication ▴ 70
2
votes
0
replies
1.3k
views
News: BIOINFORMATICS SERVICES PROVIDER - BIO KNOWLEDGE LAB, S.L.
bioinformatics-services
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
2
votes
0
replies
955
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
2
votes
0
replies
668
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
978
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 11 months ago by 43k • written 5.2 years ago by 104k
2
votes
1
reply
1.7k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by 11k
2
votes
2
replies
953
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
2
votes
0
replies
673
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 11 months ago by 43k • written 3.9 years ago by 142k
2
votes
0
replies
852
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
1.0k
views
News: precisionFDA and Georgetown-ICBI are launching the Brain Cancer Predictive Modeling and Biomarker Discovery Challenge!
brain-tumor artificial-intelligence biomarkers
updated 11 months ago by 43k • written 4.6 years ago by ▴ 150
2
votes
0
replies
149
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
704
views
News: Population Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
1.0k
views
News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
UniProt
updated 12 months ago by 43k • written 6.0 years ago by ★ 2.4k
731 results • Page 2 of 15
Recent Votes
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
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Recent Replies
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
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