News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping

News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists

Programmatic access to UniProt "Retrieve/IDmapping" service should be addressed to the URL path /uploadlists as shown in the code examples in the respective service help pages ID mapping and Batch retrieval.

See announcement for details: https://www.uniprot.org/help/uploadlists_change

/mapping and /batch will be deprecated on October 10th, 2018.

uniprot

• 1,336 views • link

updated 3.2 years ago by Ram

• written 8.2 years ago by Elisabeth Gasteiger

0 answers

No answers yet.

More posts like this

Fetching UniProt ID Mapping results as TSV using Python?
written 3.5 years ago by Eliveri •

I am using the Python code example from https://www.uniprot.org/help/id_mapping to programmatically get the ID Mapping results of a list of identifiers. However the returned results …
ClustalOmegaCommandline (multiple sequence alignment) no output file
written 6.1 years ago by evianne.rovers •

Hi, First of all, I am a bioinformatics newbie, so sorry for any obvious mistakes or syntax use. My aim is to get programmatic access …
News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
written 6.9 years ago by Elisabeth Gasteiger

On December 18, 2019 To reduce [database redundancy][1], the UniProtKB/Swiss-Prot policy is to describe, whenever possible, all protein products that are encoded by one gene …
News: UniProt: Change of FT and CC section in UniProtKB text format
written 6.9 years ago by Elisabeth Gasteiger

On December 18, 2019 We are going to change the format of the [FT (feature table)][1] and [CC (comments)][2] sections of the UniProtKB text files. …
News: UniProtKB: Standardization of 'Catalytic activity' annotations
written 7.9 years ago by Elisabeth Gasteiger

To allow [UniProt][1] to curate reactions at the level of specific enzymes instead of enzyme classes, and to use standardized names for reactants, we will …
News: uniprot.org is moving from HTTP to HTTPS
written 8.6 years ago by Elisabeth Gasteiger

UniProt is moving web pages and services from HTTP to HTTPS: We will support separate HTTP and HTTPS services until release 2018_06 (June 20, 2018). …
Using UniProt's Retrieve/ID mapping service programmatically to retrieve Taxonomy from ACC_ID
written 9.2 years ago by ladypurrsia •

I have completed a blastx run on my samples and have obtained the following result (example): $head blastx_result.txt NS500162:172:HG5CJBGXX:1:11101:2522 ZWIP2_ARATH 52.500 40 19 0 2 …
Using UniProt's Retrieve/ID mapping service programmatically
written 9.3 years ago by ladypurrsia •

I have just completed a blastx run on my samples and have obtained the following result (example): $head blastx_result.txt > NS500162:172:HG5CJBGXX:1:11101:25222 Y052L_FRG3G 52.500 40 19 …
Tutorial: How to get protein sequence from UniProtID or any other accession
written 10.1 years ago by Whoknows

Hi friends I had that problem with converting UniProtID to sequence in new version of [UniProt][1] website but I got the answer from UniProt help …
Trying to get Uniprot ID from Entrez Gene ID with Python script (solved)
written 10.8 years ago by albert.castella.teruel •

Hello everyone, I want to retrieve the uniprot identifiers from the entrez gene ID, I'm trying it programmatically with the following script: ```py import urllib,urllib2 …