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1,000 results • Page
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News:
Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 14 months ago by
Ram
43k • written 10.3 years ago by
support
▴ 650
17
votes
7
replies
9.1k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
David Langenberger
11k
27
votes
7
replies
3.7k
views
News:
The Biostar Swarm: A Visualization
biostars
updated 15 months ago by
Ram
43k • written 11.3 years ago by
Istvan Albert
100k
6
votes
7
replies
2.3k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 11 months ago by
Ram
43k • written 3.9 years ago by
zhousun21
▴ 40
24
votes
7
replies
4.5k
views
News:
#Bioinformatics Crowdcoding
crowd-coding
updated 14 months ago by
Ram
43k • written 10.8 years ago by
Pierre Lindenbaum
161k
38
votes
7
replies
2.3k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
9 months ago by
David Langenberger
11k
12
votes
7
replies
3.9k
views
News:
Welcome Ensembl REST with more endpoints!
ensembl
rest-api
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Denise CS
★ 5.2k
9
votes
6
replies
2.2k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 16 months ago by
Ram
43k • written 9.0 years ago by
HG
★ 1.2k
8
votes
6
replies
17k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Ahmed Youssef
▴ 70
1
vote
6
replies
1.2k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 16 months ago by
synat.keam
▴ 100 • written 17 months ago by
carlopecoraro2
★ 2.5k
2
votes
6
replies
2.9k
views
News:
Master in integrated systems biology / Luxembourg
systems-biology
Masters-course
updated 12 months ago by
Ram
43k • written 6.8 years ago by
Rainer
▴ 130
3
votes
6
replies
2.7k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Sean Davis
26k
8
votes
6
replies
1.5k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Istvan Albert
100k
8
votes
6
replies
4.0k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by
Ram
43k • written 11.3 years ago by
David Langenberger
11k
14
votes
6
replies
7.1k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 17 months ago by
Ram
43k • written 8.9 years ago by
David Langenberger
11k
17
votes
6
replies
9.0k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation
RNA-seq
updated 14 months ago by
Ram
43k • written 10.1 years ago by
David Langenberger
11k
32
votes
6
replies
13k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
genbank
pubmed
command-line
entrez
updated 14 months ago by
Ram
43k • written 10.3 years ago by
Pierre Lindenbaum
161k
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
9 months ago by
Alexander
▴ 220
1
vote
5
replies
1.2k
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
5
replies
2.6k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
genome
SNP
sequence
updated 13 months ago by
Ram
43k • written 7.5 years ago by
carlopecoraro2
★ 2.5k
6
votes
5
replies
5.3k
views
News:
NCBI MagicBlast ( Short read mapper )
blast
ncbi
short-read
mapper
hts
updated 13 months ago by
Ram
43k • written 7.7 years ago by
Pierre Lindenbaum
161k
3
votes
5
replies
2.3k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 13 months ago by
Ram
43k • written 7.7 years ago by
EagleEye
7.5k
9
votes
5
replies
3.7k
views
News:
SAMTOOLS 1.4 released
samtools
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Pierre Lindenbaum
161k
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 15 months ago by
Ram
43k • written 6.7 years ago by
Istvan Albert
100k
7
votes
5
replies
2.6k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen
Unix
Assembly
alignment
updated 12 months ago by
Ram
43k • written 7.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
5
replies
1.6k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
RNA-Seq
DNA-Seq
updated 12 months ago by
Ram
43k • written 5.9 years ago by
David Langenberger
11k
0
votes
5
replies
2.0k
views
News:
Ashg 2012 Biostar Meetup
ASHG
updated 15 months ago by
Ram
43k • written 11.5 years ago by
Zev.Kronenberg
12k
14
votes
5
replies
3.4k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta
biostars
updated 15 months ago by
Ram
43k • written 10.8 years ago by
Michael
54k
33
votes
5
replies
3.8k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics
Workshop
Bisulfite-Sequencing
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Adele Feuerstein
▴ 460
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 8 months ago by
alejandrogzi
▴ 120 • written 18 months ago by
dlaehnemann
▴ 30
4
votes
5
replies
2.8k
views
News:
Kover will provide support via Biostars
kmer
kover
machine-learning
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Alexandre Drouin
▴ 90
9
votes
5
replies
8.8k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 15 months ago by
Ram
43k • written 11.5 years ago by
wchknudt
▴ 50
9
votes
5
replies
3.1k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Sean Davis
26k
19
votes
4
replies
2.5k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 13 months ago by
Ram
43k • written 7.6 years ago by
David Langenberger
11k
10
votes
4
replies
2.7k
views
News:
Ensembl 77 is out
ensembl
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Emily
23k
6
votes
4
replies
1.3k
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
4
replies
2.0k
views
News:
webserver of TCGA data www.tcgaportal.org
genome
RNA-Seq
TCGA
gene
updated 12 months ago by
Ram
43k • written 6.0 years ago by
xushutan
▴ 40
14
votes
4
replies
3.4k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 22 months ago by
Ram
43k • written 8.3 years ago by
David Langenberger
11k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by
Ram
43k • written 2.7 years ago by
chen
★ 2.5k
7
votes
4
replies
2.7k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 14 months ago by
Ram
43k • written 11.1 years ago by
Mary
11k
3
votes
4
replies
2.4k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 13 months ago by
Ram
43k • written 7.6 years ago by
AABI
▴ 140
2
votes
4
replies
2.0k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
visualization
genome-browser
RNA-seq
updated 14 months ago by
Ram
43k • written 10.6 years ago by
Ann
★ 2.4k
9
votes
4
replies
3.7k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 14 months ago by
Ram
43k • written 11.4 years ago by
okko.clevert
▴ 240
10
votes
4
replies
1.8k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
10
votes
4
replies
1.0k
views
News:
Good morning
good
morning
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
Kevin Blighe
88k
5
votes
4
replies
1.9k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 13 months ago by
Ram
43k • written 7.2 years ago by
pediatriconcology
• 0
1
vote
4
replies
1.5k
views
News:
Spring School for RNA-seq Sequence Analysis
RNA-Seq
genome
sequence
sequencing
updated 13 months ago by
Ram
43k • written 7.3 years ago by
scientificcomputingismms
▴ 10
12
votes
4
replies
2.1k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 12 months ago by
Ram
43k • written 6.0 years ago by
kzkedzierska
▴ 290
10
votes
4
replies
1.3k
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 14 months ago by
kng
▴ 30 • written 15 months ago by
David Langenberger
11k
6
votes
4
replies
1.2k
views
News:
Upcoming online training courses
Python
R
2.8 years ago by
carlopecoraro2
★ 2.5k
1,000 results • Page
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Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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