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1,000 results • Page 3 of 20
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5
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4
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1.4k
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Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 44k • written 18 months ago by ▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 12 months ago by ★ 1.4k • written 13.2 years ago by 22k
15
votes
13
replies
4.3k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
0
votes
2
replies
1.0k
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 17 months ago by 44k • written 20 months ago by • 0
4
votes
5
replies
1.5k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 12 months ago by 44k • written 19 months ago by • 0
2
votes
1
reply
885
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 16 months ago by 6.4k • written 19 months ago by ▴ 30
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 12 months ago by 44k • written 20 months ago by 6.2k
2
votes
3
replies
966
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 20 months ago by 22k • written 20 months ago by ▴ 10
19
votes
13
replies
2.7k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by 6.6k • written 20 months ago by ▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 20 months ago by • 0 • written 20 months ago by ★ 1.4k
4
votes
4
replies
1.4k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 20 months ago by 100k • written 21 months ago by ▴ 70
2
votes
4
replies
1.2k
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 14 months ago by 44k • written 21 months ago by ▴ 230
2
votes
4
replies
1.0k
views
Forum: strand specific data
strand DNA RNA specific coding
21 months ago by upasana • 0
3
votes
0
replies
836
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
21 months ago by LauferVA 4.2k
7
votes
14
replies
2.5k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 21 months ago by 3.9k • written 21 months ago by ▴ 90
4
votes
4
replies
1.4k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 17 months ago by 44k • written 23 months ago by ★ 2.5k
2
votes
7
replies
1.4k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 22 months ago by 44k • written 22 months ago by ▴ 20
6
votes
3
replies
2.3k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 22 months ago by 4.6k • written 22 months ago by 19k
0
votes
1
reply
643
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 22 months ago by 82k • written 22 months ago by • 0
4
votes
2
replies
1.9k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 17 months ago by 44k • written 22 months ago by 4.2k
0
votes
0
replies
757
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
22 months ago by goddy93 • 0
3
votes
1
reply
706
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 22 months ago by 44k • written 22 months ago by • 0
5
votes
2
replies
1.7k
views
Forum: Skills for industry career in bioinformatics
industry
updated 22 months ago by 13k • written 22 months ago by ▴ 10
9
votes
6
replies
1.3k
views
Forum: Programming languages in industry
programming language
updated 22 months ago by 9.7k • written 23 months ago by ▴ 30
2
votes
6
replies
1.3k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
23 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
822
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
23 months ago by Francesco ▴ 20
3
votes
2
replies
871
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 11 months ago by 44k • written 23 months ago by ▴ 50
0
votes
0
replies
767
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 17 months ago by 44k • written 23 months ago by ▴ 30
24
votes
6
replies
5.1k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 18 months ago by 44k • written 5.8 years ago by ★ 9.4k
7
votes
8
replies
1.6k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 18 months ago by 44k • written 24 months ago by 2.8k
0
votes
0
replies
654
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 17 months ago by 44k • written 24 months ago by ★ 1.5k
1
vote
3
replies
2.6k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 24 months ago by 3.9k • written 24 months ago by • 0
3
votes
3
replies
959
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 24 months ago by 27k • written 24 months ago by ★ 2.9k
0
votes
0
replies
383
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 17 months ago by 44k • written 24 months ago by ▴ 20
0
votes
2
replies
1.2k
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 24 months ago by 54k • written 24 months ago by ▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 21 months ago by 44k • written 8.6 years ago by ★ 9.4k
6
votes
8
replies
3.1k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
2.0 years ago by stan.aanhane ▴ 30
2
votes
3
replies
964
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 17 months ago by 44k • written 2.0 years ago by ▴ 30
2
votes
2
replies
960
views
Forum: Project ideas
project-ideas
updated 2.0 years ago by 54k • written 2.0 years ago by • 0
0
votes
0
replies
589
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
2.0 years ago by ch333 • 0
1
vote
6
replies
1.1k
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 23 months ago by 44k • written 2.1 years ago by • 0
2
votes
2
replies
800
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 17 months ago by 44k • written 2.1 years ago by • 0
5
votes
5
replies
1.1k
views
Forum: Best book introducing R programming?
coding R
2.1 years ago by Scottie ▴ 10
4
votes
6
replies
1.6k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
2.1 years ago by Matthias Zepper 4.6k
0
votes
0
replies
634
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 17 months ago by 44k • written 2.1 years ago by ▴ 120
0
votes
0
replies
576
views
Forum: Master's topic in Bioinformatics
Bio-informatique
2.1 years ago by Badji Oumar • 0
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 15 months ago by 44k • written 8.9 years ago by 100k
0
votes
1
reply
823
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
2.1 years ago by hkrtrainings408 • 0
47
votes
24
replies
6.6k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 17 months ago by 44k • written 6.6 years ago by 54k
5
votes
8
replies
2.8k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 17 months ago by 44k • written 2.1 years ago by ▴ 10
1,000 results • Page 3 of 20
Recent Votes
Answer: How to scrape BioMart data from https://sorfs.ugent.be/ website
Low DESeq2 Sensivity on scRNA Pseudobulk Samples
DESEQ2: How can I convert ensembl gene id's to HGNC gene names.
Problem with Ensembl version identifiers after running DESeq2
Issues with adding gene name and entrez ID to DESeq2 result having Ensembl ID.
A: Looking for differential gene expression between treatment, within a specific cl
How to compare cell-type ratios in sc-RNA seq data?
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Recent Replies
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website by Pierre Lindenbaum 162k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Harmony integration group.by.var parameter by Picasa ▴ 640
@jaredandrews07 If I integrate using Donor: ```R RunHarmony(seu_obj, group.by.vars = c("Donor_ID")) ``` Should I also normalize my data…
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website by QX • 0
thank you so much!
Answer: Attempt to set 'rownames' on an object with no dimensions by elbakri.fatimazahrae • 0
hello everyone, I got the same error for a function immuCellAI_new; result <- ImmuCellAI_new(countData = expr_data_log22, data_type = "rnas…
Comment: Merging multiple samples in Seurat by Picasa ▴ 640
did you split by sample or donor ?
Comment: Harmony integration group.by.var parameter by Picasa ▴ 640
For downstream analysis, after integration, my plan is to annotate each cluster/cell type and then perform a DGE analysis of KO versus WT f…
Comment: How to calculate cell type frequency between two groups in single cell data by Bastien Hervé 5.3k
That is correct
Answer: Setting a threshold on gene expression for subsetting (scRNA-seq) by ATpoint 82k
That depends on the data and the marker. Generally I would plot violins per cluster for the marker(s) and see whether one robustly overexpr…
Comment: Error when i use EVidenceModeler to do the genome annotation by peanut • 0
thank you so much ,i get it
Comment: Number of non-ATCG nucleotides replaced by Salmon by Tonya S. ▴ 10
Oops, yes, that must be where they are coming from. For some reason, I was thinking the genome was just soft-masked. How embarrassing! Than…
Answer: Number of non-ATCG nucleotides replaced by Salmon by Rob 6.6k
If there are no other signs that anything is awry, I probably wouldn't worry about this. Is it possible that these non-canonical nucleotid…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage by Brian Bushnell 20k
I examined nine 10B runs and five 25B runs (we just started getting 25B flowcells a few months ago). I did not pay close attention but it …
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage by GenoMax 142k
> I don't know how widespread these issues are outside of JGI. Very few small/medium sequencing centers likely have NovaSeq X. This is the…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage by Brian Bushnell 20k
Supporting figures, taken from some slides I prepared for internal use. HDist 0, 1, and 2 correspond to 0, 1, and 2 mismatches allowed in …
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
This works. Thank you so so much!
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