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329 results • Page
2 of 7
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Votes
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3
votes
3
replies
960
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 8 months ago by
Ram
44k • written 8 months ago by
S
• 0
19
votes
15
replies
2.3k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 21 hours ago by
Mohamed
• 0 • written 8 months ago by
vincenthus
▴ 70
19
votes
10
replies
1.6k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
Sasha
▴ 850
9
votes
6
replies
2.0k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 8 months ago by
ATpoint
82k • written 18 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
653
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 8 months ago by
Ram
44k • written 8 months ago by
Fouad
▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
8 months ago by
anasjamshed
▴ 120
2
votes
5
replies
982
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 7 months ago by
Ram
44k • written 8 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.2k
views
Forum:
open source projects looking for contributors
open-source
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
claudiofr
▴ 20
0
votes
0
replies
553
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 9 months ago by
Ram
44k • written 9 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
1.4k
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 9 months ago by
GenoMax
142k • written 9 months ago by
James Reeve
▴ 130
0
votes
0
replies
591
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 9 months ago by
Ram
44k • written 9 months ago by
RM123
▴ 10
1
vote
3
replies
807
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 9 months ago by
GenoMax
142k • written 9 months ago by
morovatunc
▴ 550
11
votes
8
replies
1.5k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
44k • written 9 months ago by
joey
▴ 10
365
votes
58
replies
70k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 7 months ago by
Ram
44k • written 14.2 years ago by
Istvan Albert
100k
1
vote
2
replies
18k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
10 months ago by
LauferVA
4.2k
0
votes
3
replies
3.9k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 17 months ago by
SushiRoll
▴ 120
2
votes
3
replies
823
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 10 months ago by
GenoMax
142k • written 10 months ago by
LauferVA
4.2k
0
votes
2
replies
1.3k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 11 months ago by
Asaf
10k • written 11 months ago by
Davide
• 0
33
votes
23
replies
4.3k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 11 months ago by
Jeremy Leipzig
22k • written 11 months ago by
LauferVA
4.2k
7
votes
8
replies
2.0k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
11 months ago by
K
• 0
2
votes
3
replies
889
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 11 months ago by
Mensur Dlakic
★ 27k • written 11 months ago by
Andy
• 0
0
votes
0
replies
460
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 11 months ago by
Ram
44k • written 11 months ago by
nick_b55
▴ 10
7
votes
4
replies
1.1k
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 11 months ago by
Ram
44k • written 11 months ago by
LauferVA
4.2k
2
votes
2
replies
623
views
Forum:
Colleges
Colleges
india
universities
updated 11 months ago by
Ram
44k • written 11 months ago by
mahimanepalli36
• 0
19
votes
15
replies
2.1k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 12 months ago by
Ram
44k • written 6.0 years ago by
Bastien Hervé
5.3k
103
votes
42
replies
31k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 6 weeks ago by
Jeremy Leipzig
22k • written 10.5 years ago by
14134125465346445
★ 3.6k
4
votes
5
replies
1.4k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
updated 3 months ago by
alva
• 0 • written 13 months ago by
cwaingartentrabajo
• 0
10
votes
15
replies
2.2k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 15 months ago by
Maximilian Haeussler
★ 1.6k
5
votes
4
replies
1.4k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 11 months ago by
Ram
44k • written 18 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.3k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 4 months ago by
benformatics
3.9k • written 18 months ago by
buhbs
▴ 30
3
votes
2
replies
869
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 11 months ago by
Ram
44k • written 23 months ago by
BioInfoBeginner
▴ 50
3
votes
1
reply
940
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 3 months ago by
BioinfGuru
★ 1.7k • written 2.2 years ago by
rohitsatyam102
▴ 870
17
votes
14
replies
3.4k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 11 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
782
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by
Ram
44k • written 2.4 years ago by
carlopecoraro2
★ 2.5k
12
votes
7
replies
7.3k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 8 weeks ago by
dsull
★ 6.0k • written 2.7 years ago by
hamarillo
▴ 70
0
votes
0
replies
525
views
Forum:
Poll about a structured description of a tool, a pipeline
survey
pipeline
updated 11 months ago by
Ram
44k • written 2.8 years ago by
Anastasiya M
• 0
0
votes
2
replies
793
views
Forum:
A new data analytics platform for next gen sequencing
next-gen-sequencing
RNA-Seq
updated 3 months ago by
Ram
44k • written 3.4 years ago by
thezgabby
• 0
8
votes
1
reply
7.3k
views
Forum:
What are chromatin states ?
genome
ChIP-Seq
3 months ago by
rohitsatyam102
▴ 870
2
votes
6
replies
3.1k
views
Forum:
RIP CentOS, CentOS 8 to be EOL'd in 2021
centos
linux-distro
os
updated 11 months ago by
Ram
44k • written 3.5 years ago by
5heikki
11k
0
votes
0
replies
931
views
Forum:
MAGs annotation tools
annotation
genome
updated 11 months ago by
Ram
44k • written 4.3 years ago by
willnotburn
▴ 50
4
votes
5
replies
1.3k
views
Forum:
Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by
Ram
44k • written 3.5 years ago by
neelk1123
• 0
1
vote
2
replies
855
views
Forum:
bioinformatics career choice - could use guidance
career
updated 11 months ago by
Ram
44k • written 3.5 years ago by
ssc229
• 0
19
votes
7
replies
1.3k
views
9 follow
Forum:
DNA in pixels
genome
alignment
sequencing
updated 11 months ago by
Ram
44k • written 3.5 years ago by
mervsen
▴ 30
0
votes
1
reply
592
views
Forum:
What are the best online tutoring sites for biology help?
Biology
updated 11 months ago by
Ram
44k • written 3.5 years ago by
hendersonken325
• 0
4
votes
1
reply
733
views
Forum:
Help with Bioinformatics Course
cancer
updated 11 months ago by
Ram
44k • written 3.7 years ago by
deemassh
• 0
0
votes
0
replies
713
views
Forum:
Interview: Identifying the allelic expression of INDEL mutations
SNP
RNA-Seq
alignment
updated 11 months ago by
Ram
44k • written 3.6 years ago by
adglink
• 0
73
votes
14
replies
4.3k
views
12 follow
Forum:
Things you wish you knew when entering the bioinformatics field
pitfalls
advice
updated 11 months ago by
Ram
44k • written 3.7 years ago by
jared.andrews07
★ 17k
0
votes
4
replies
1.0k
views
Forum:
Genes inhibiting each other's expression
Gene-expression
updated 11 months ago by
Ram
44k • written 3.7 years ago by
priya.bmg
▴ 60
9
votes
6
replies
1.5k
views
Forum:
How to start my career in Bioinformatics
career
updated 11 months ago by
Ram
44k • written 3.8 years ago by
Sashi G
▴ 10
329 results • Page
2 of 7
Recent Votes
Answer: geom_bar issue in ggplot2 with xlim()
A: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
GO analysis: Different results EnrichGO vs ShinyGO
Comment: NGS forensics: how to know if data is fabricated
T2T-CHM13 "complete" human genome gff/gtf annotation file
Answer: T2T-CHM13 "complete" human genome gff/gtf annotation file
Comment: Problem in getting geo file through GEOQUERY
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Recent Replies
Comment: Splitting query fasta file for Diamond Blastp make the process faster?
by
kmat
• 0
Thank you for your quick responce. Sorry for the lack of explanation. Here are some supplementary details regarding the parameters of Diam…
Answer: Splitting query fasta file for Diamond Blastp make the process faster?
by
Mensur Dlakic
★ 27k
There are several pieces of information we are missing here. Did you specify that all 96 threads be used? If so, are all of them being used…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Luqman
• 0
Yes please see below: TraesCS2B02G372900 TraesCS2B02G375100 TraesCS2B02G374700 TraesCS2B02G382000
Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴ 100
Thanks for your answer, but as far as I know, gProfiler2 does not support bacteria. Could you please suggest alternative websites or softwa…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Hi Alex, I'm sorry if I wasn't initially clear! The question hasn't changed; I had written in this post that I wanted all pairwise combinat…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 20
Could share some examples for gene_ids?
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
yeah but i am unable to find the link of GPL6244.soft.gz
Comment: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
> Can you send me ftp link so I can download that soft file manually? Please find this link on your own by browsing the respective GEO ent…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
Thanks . I have downloaded all other files but just have problem in Error in downloadFile(myurl, destfile, mode = mode, quiet = TRUE)…
Answer: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
Code runs for me and finishes in seconds. Maybe some poor internet connection on your end. Just set the timeout to 9999999 and retry. If th…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
ezz3
• 0
Thanks. I was wondering if that is the case but was having some issues understanding the transanno code which is written in rust and I don…
Answer: Multi-ploid data in ANGSD and NGSadmix
by
andersdetermig
▴ 20
1 ) I would not expect the haploid individuals to always cluster together but the model assumptions are violated. First of all the diploid…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
Pierre Lindenbaum
161k
"Are you using correct reference?" may be your reference is not using the same chrM. see https://www.biostars.org/p/199796/#199803
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴ 50
Could you please elaborate on what you mean by passing -L or -V, i.e. what would the appropriate argument be for -L with UnifiedGenotyper f…
Answer: Add stats to the plot
by
Ghada
• 0
It works. I have added this code my_comparisons=list(c("HRSV", "HRSV_RBV")) plot + stat_compare_means(method = "wilcox.test",…
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