Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
19
votes
14
replies
14k
views
11 follow
Is there a easy to use GATK pipeline for SNP calling?
GATK
updated 3.4 years ago by ▴ 130 • written 6.1 years ago by ★ 1.1k
32
votes
11
replies
45k
views
9 follow
How To Sort Sam File
samtools sam
updated 15 months ago by 43k • written 10.2 years ago by ★ 1.1k
46
votes
14
replies
27k
views
12 follow
Which Bioinformatics Tools Are Written In Python
python
updated 10 months ago by 43k • written 11.7 years ago by ★ 1.1k
19
votes
11
replies
4.5k
views
7 follow
What'S Easy Framework For Writing Gui Tools In Bioinformatics
visualization
updated 10 months ago by 43k • written 10.5 years ago by ★ 1.1k
2
votes
2
replies
1.2k
views
What is the difference between Bioconda and Galaxy?
galaxy bioconda
updated 13 months ago by 43k • written 5.7 years ago by ★ 1.1k
0
votes
3
replies
1.2k
views
Can SNP array handle clustered SNPs
SNP SNP array SNP calling
6.1 years ago by Chen Sun ★ 1.1k
0
votes
3
replies
2.1k
views
What do these 10X Genomics sequencing metrics mean?
10X 10X sequencing 10X Genomics barcode
6.3 years ago by Chen Sun ★ 1.1k
3
votes
4
replies
2.1k
views
In GATK, SNPs and INDELs are called separately or together?
GATK SNP INDEL variant
updated 6.5 years ago by 20 • written 7.2 years ago by ★ 1.1k
1
vote
4
replies
1.6k
views
Which mapping tool takes read quality score into account
bwa bowtie2 mapping quality score
updated 6.6 years ago by 35k • written 6.6 years ago by ★ 1.1k
2
votes
1
reply
2.5k
views
Which Kinds Of Pair-End Reads Direction Do We Have Now?
updated 6.9 years ago by 20 • written 10.2 years ago by ★ 1.1k
14
votes
15
replies
2.4k
views
Does jellyfish 2 support kmer size > 31
jellyfish kmer kmer counting Jellyfish
7.0 years ago by Chen Sun ★ 1.1k
4
votes
3
replies
1.4k
views
Who is in charge of updating VCF format?
vcf
updated 7.2 years ago by 161k • written 7.2 years ago by ★ 1.1k
4
votes
4
replies
3.9k
views
How To Download Venter Genome
JCVI genome
updated 13 months ago by 43k • written 10.2 years ago by ★ 1.1k
10
votes
11
replies
5.2k
views
7 follow
where to download blat command tool for windows?
blat windows
updated 7.3 years ago by ▴ 100 • written 8.0 years ago by ★ 1.1k
14
votes
6
replies
3.1k
views
Can FM Index be built in linear time?
FM-Index BWA Bowtie2 bowtie alignment
updated 7.7 years ago by 33k • written 7.7 years ago by ★ 1.1k
3
votes
6
replies
3.1k
views
Is there a Faster tool to convert from .SRA files to .Fastq ?
SRA Fastq NCBI
8.0 years ago by Chen Sun ★ 1.1k
4
votes
8
replies
5.7k
views
C++ how to read VCF file in indexed bgzip format?
samtools bcftools htslib vcftools bgzip
updated 8.0 years ago by ▴ 20 • written 8.0 years ago by ★ 1.1k
0
votes
1
reply
2.5k
views
Question about genotype phased PQ and PS in VCF file format 4.1
VCF genotype phased SNP
updated 8.1 years ago by ★ 2.1k • written 8.1 years ago by ★ 1.1k
24
votes
10
replies
6.3k
views
Which Journals Should I Follow If I Write Software And Algorithms In Computational Biology?
career
updated 14 months ago by 43k • written 11.8 years ago by ★ 1.1k
12
votes
5
replies
2.3k
views
C++ tools are hard to install for biologist, why the community stick on it?
Cpp Java
updated 11 months ago by 43k • written 8.2 years ago by ★ 1.1k
3
votes
4
replies
2.8k
views
How to find the self aligned repeat region in human genome
repeat region alignment repeatmasker
updated 19 months ago by 43k • written 8.6 years ago by ★ 1.1k
33
votes
3
replies
16k
views
In Cigar String, What Is The Difference Between 'N' And 'D' ?
cigar bam sam
updated 15 months ago by 43k • written 10.1 years ago by ★ 1.1k
6
votes
3
replies
4.8k
views
Why a single gene can have multiple locations in chromosome?
gene-annotation genbank gene-location
updated 23 months ago by 43k • written 9.1 years ago by ★ 1.1k
5
votes
1
reply
2.3k
views
What is the difference between chr17 and chr17_KI270860v1_alt, for human genome hg38?
gene annotation human genome genome sequence UCSC
updated 9.1 years ago by 22k • written 9.1 years ago by ★ 1.1k
1
vote
4
replies
2.4k
views
Can I get SNP information by individual from dbSNP
SNP dbSNP
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 1.1k
1
vote
3
replies
1.7k
views
tool simulate paired-end reads and report where each read come from
paired-end simulation
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 1.1k
5
votes
2
replies
7.0k
views
Delly: how does delly decide whether a SV is imprecise or precise
delly structuralvariation
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 1.1k
6
votes
9
replies
5.6k
views
Why Bam File Been Seperated By Samtools
bam samtools
updated 9.8 years ago by 20 • written 10.2 years ago by ★ 1.1k
0
votes
4
replies
2.9k
views
How to get karyotype information for a certain section of genome.
karyotype
updated 2.6 years ago by 43k • written 9.9 years ago by ★ 1.1k
3
votes
2
replies
6.4k
views
How to estimate depth of coverage for a windows size on genome?
DOC depth-of-coverage
updated 2.6 years ago by 43k • written 10.0 years ago by ★ 1.1k
31
votes
2
replies
21k
views
Any difference between capital letter(ATGC) and lowercase letter(atgc) in hg19 fasta file
fasta hg19
updated 10.1 years ago by 161k • written 10.1 years ago by ★ 1.1k
6
votes
4
replies
5.4k
views
Samtools Have Trouble "View" Bwa Mem Result, But Good With Bwa Sampe Result?
samtools bwa
updated 10.1 years ago by 104k • written 10.1 years ago by ★ 1.1k
0
votes
2
replies
2.1k
views
What Does That Mean That Structural Variation Happened In Negative Strand
updated 10.1 years ago by 9.7k • written 10.1 years ago by ★ 1.1k
2
votes
3
replies
3.6k
views
In Sam File Flag Information, How Could Unmapped Read Have A Direction?
sam mapping
updated 10.2 years ago by 12k • written 10.2 years ago by ★ 1.1k
3
votes
1
reply
1.9k
views
Which Data Format Should I Use To Display My Own Data In Igv
igv format visualization
updated 10.2 years ago by 104k • written 10.2 years ago by ★ 1.1k
2
votes
4
replies
5.3k
views
How To Find The Most Frequent Allel Snp In Vcf File
vcf snp
10.2 years ago by Chen Sun ★ 1.1k
36 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6