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Can SNP array handle clustered SNPs

Can SNP arrays such as Affymetrix genome-wide SNP array 6.0 handle clustered SNPs.

By clustered SNPs I mean SNPs that are very close to each other, for instance, SNPs that are closer than 10 bp?

snp snp array snp calling
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written by Chen Sun Chen Sun

Hi Chen,

This doesn't really look like a bioinformatics question to me, and it's a question you probably have to ask Affymetrix themselves. I would expect it's hard to design probes for those SNPs.

Cheers,
Wouter

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written by WouterDeCoster WouterDeCoster

I agree, and thank you for the information. I will double think before I ask next time. Please delete if possible.

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written by Chen Sun Chen Sun

There is no need to delete questions :-)

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written by WouterDeCoster WouterDeCoster

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