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Can I get SNP information by individual from dbSNP

Hi all,

I download the dbSNP data, both all and common SNP information, which is produced by 1000G project.

But I do not want to use all the information. I want to use just one individual's SNP information, but I did not find the relation between each SNP ID and individual ID.

Is there a way I can extract or acquire just one individual's SNP information for analysis?

snp dbsnp
• 3,056 views • link
updated by Ram Ram • written by Chen Sun Chen Sun

2 answers

For those who concerned, there is a website that can get at least Venter's SNP information, please refer to this: http://huref.jcvi.org/

• 1 views • link
updated by Ram Ram • written by Chen Sun Chen Sun

For a VCF use bcftools with option

-s, --samples [^]LIST

Comma-separated list of samples to include or exclude if prefixed with "^".

-S, --samples-file [^]FILE

File of sample names to include or exclude if prefixed with "^". One sample per line. The command bcftools call accepts an optional second column indicating ploidy (0, 1 or 2) and can parse also PED files. With bcftools call -C trio, PED file is expected.

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updated by Ram Ram • written by Pierre Lindenbaum Pierre Lindenbaum

I mean, all I get is mixed SNP information, there is no column indicate which individual it come from

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written by Chen Sun Chen Sun

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