What do these 10X Genomics sequencing metrics mean?
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6.3 years ago
Chen Sun ★ 1.1k

Some papers report their 10X Genomics barcoded short-reads dataset summary metrics. I can not find the meaning of some metrics on 10X Genomics website.

  1. Mean Barcode Richness
  2. Mean Barcode Size

What does Barcode Richness and Barcode Size mean here?

I can only find this: https://support.10xgenomics.com/genome-exome/software/pipelines/latest/output/metrics

10X 10X sequencing 10X Genomics barcode • 2.1k views
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Hi Chen, I have worked on 10x data from longranger wgs. Where exactly did you find these metrics?

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On page 7, Table 1 of this paper: https://www.biorxiv.org/content/early/2017/11/10/217869. Thanks!

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Sorry, I have never heard of them. It would be best to contact the authors of the manuscript or 10x Genomics, just to be sure.

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