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0
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164
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Bacterial genome alignment with mauve
Bacteria mauve genome
29 days ago by rthapa ▴ 90
1
vote
5
replies
1.6k
views
allele frequency from different read depths
allele depth frequency vcf read
updated 2.9 years ago by ▴ 420 • written 2.9 years ago by ▴ 90
0
votes
2
replies
1.1k
views
subset of paired end reads from bam file or fastq file of different depth
depth ShortRead samtools read
3.0 years ago by rthapa ▴ 90
0
votes
3
replies
990
views
Issue on downloading fastPHASE in Mac
fastPHASE
updated 3.0 years ago by 2.8k • written 3.8 years ago by ▴ 90
0
votes
0
replies
574
views
Discrepancy in structural variants results from mauve and MUM&Co
assembly structural variants mauve MUMandCo
updated 3.2 years ago by 20 • written 3.3 years ago by ▴ 90
0
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0
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652
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Identification of presence of genes by aligning the illumina reads to reference genome with Geneious
geneious alignment mapping
3.2 years ago by rthapa ▴ 90
0
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0
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419
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finding coverage of particular gene sequence from illumina short reads
coverage illumina
3.2 years ago by rthapa ▴ 90
0
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7
replies
3.9k
views
MUMmer plot visualization
MUMmer plot
updated 3 months ago by • 0 • written 3.3 years ago by ▴ 90
0
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0
replies
685
views
MUMmer for structural variant call
MUMmer structural variants circlator
3.3 years ago by rthapa ▴ 90
0
votes
0
replies
606
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Assembly based structural variants detection
Assembly structural variants syri mumandco
3.3 years ago by rthapa ▴ 90
0
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0
replies
525
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Structural variants call from circular genome
Assembly structural variants bacterial genome
3.3 years ago by rthapa ▴ 90
0
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3
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924
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Assembly based structural variants call from bacterial genome
nanopore structural variants Assembly
3.3 years ago by rthapa ▴ 90
0
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4
replies
1.1k
views
Structural variants detection from assembled genome from Nanopore sequence data
genome Assembly nanopore
updated 3.3 years ago by ★ 1.9k • written 3.3 years ago by ▴ 90
2
votes
5
replies
1.4k
views
bacterial genome assembly output from canu
bacteria genome assembly canu
updated 3.4 years ago by ▴ 130 • written 3.4 years ago by ▴ 90
1
vote
5
replies
1.2k
views
de novo genome assembly of bacterial genome
assembly genome bacteria
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 90
0
votes
1
reply
971
views
structural variants from mauve
structural variants mauve de novo assembly
updated 3.4 years ago by 20 • written 3.4 years ago by ▴ 90
0
votes
3
replies
976
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bacterial genome assembly with canu and alignment with reference genome with mauve
Assembly canu mauve
3.4 years ago by rthapa ▴ 90
0
votes
3
replies
728
views
bacterial genome assembly with nano pore sequence data
assembly nanopore
3.6 years ago by rthapa ▴ 90
0
votes
0
replies
794
views
Vst estimation across different populations from copy number data
genome Copy number Vst
3.6 years ago by rthapa ▴ 90
1
vote
5
replies
2.4k
views
mauve for contigs
genome mauve
updated 3.7 years ago by ▴ 490 • written 3.7 years ago by ▴ 90
1
vote
2
replies
780
views
Copy number variation data for population structure analysis
CNV
updated 19 months ago by ▴ 10 • written 3.7 years ago by ▴ 90
0
votes
7
replies
4.3k
views
B allele frequency (BAF)
snp
updated 2 days ago by ▴ 10 • written 3.7 years ago by ▴ 90
0
votes
3
replies
1.4k
views
KaryoploteR for copy number
genome KaryoploteR
updated 3.9 years ago by 8.5k • written 3.9 years ago by ▴ 90
3
votes
1
reply
2.4k
views
quality check of vcf files
vcf SNP
updated 4.0 years ago by ▴ 260 • written 4.0 years ago by ▴ 90
0
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0
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698
views
CNVRs visualization with karyoploteR
cnv
4.0 years ago by rthapa ▴ 90
0
votes
0
replies
567
views
Phenotypic evaluation of significant SNPs from GWAS result
SNP
4.1 years ago by rthapa ▴ 90
0
votes
0
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822
views
GWAS of ordinal phenotypes with MCMCglmm model
SNP r
4.2 years ago by rthapa ▴ 90
0
votes
12
replies
4.3k
views
error reading bed files for bedtools intersect
bedtools intersect
updated 4.3 years ago by 161k • written 4.3 years ago by ▴ 90
0
votes
0
replies
1.2k
views
GO term using GOAtools
GOAtools
4.4 years ago by rthapa ▴ 90
0
votes
3
replies
821
views
methylation coverage in the gene region
methylation
4.5 years ago by rthapa ▴ 90
0
votes
0
replies
842
views
codon adaptation index (CAI) estimation
codon usage
4.6 years ago by rthapa ▴ 90
0
votes
0
replies
847
views
codon bias estimation (CAI)
protein
4.6 years ago by rthapa ▴ 90
1
vote
1
reply
1.1k
views
methylation coverage in the gene region
methylation
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 90
1
vote
3
replies
1.1k
views
coverage of narrow peaks on genomic region using bedtools
ChIP-Seq
updated 4.6 years ago by ★ 3.8k • written 4.6 years ago by ▴ 90
4
votes
13
replies
5.2k
views
pysam alignment error
alignment
updated 4.6 years ago by ▴ 580 • written 4.6 years ago by ▴ 90
0
votes
1
reply
744
views
parent GO terms
genome
4.6 years ago by rthapa ▴ 90
3
votes
1
reply
842
views
Chip seq coverage
ChIP-Seq
4.6 years ago by rthapa ▴ 90
0
votes
0
replies
632
views
SNP density per genes
SNP
4.6 years ago by rthapa ▴ 90
0
votes
0
replies
750
views
Maximum intensity among overlapping peaks and peak coverage
ChIP-Seq
4.6 years ago by rthapa ▴ 90
0
votes
1
reply
1.8k
views
DESeq2 lfc shrinkage
rna-seq
updated 5.0 years ago by ▴ 470 • written 6.4 years ago by ▴ 90
0
votes
1
reply
803
views
Significance level of each variable used in the model
RNA-Seq
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 90
0
votes
1
reply
859
views
Haplotypes analysis from SNP chip data
SNP
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 90
1
vote
2
replies
2.4k
views
r2 and LD value estimation between significant SNPs identified from GWAS
SNP R
5.2 years ago by rthapa ▴ 90
0
votes
1
reply
707
views
Comparison of samples of different read lengths in differential gene expression analysis
RNA-Seq
updated 5.3 years ago by 14k • written 5.3 years ago by ▴ 90
0
votes
6
replies
2.4k
views
extra gene ids in gene count matrix than in gtf file
RNA-Seq
5.3 years ago by rthapa ▴ 90
1
vote
2
replies
1.2k
views
Subset of samples from a large hap map dataset
SNP
updated 5.3 years ago by 20 • written 5.4 years ago by ▴ 90
0
votes
1
reply
1.2k
views
txt files of upregulated and down regulated genes
RNA-Seq
updated 6.3 years ago by 47k • written 6.3 years ago by ▴ 90
9
votes
5
replies
4.2k
views
best value of lfc threshold
RNA-Seq
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 90
5
votes
2
replies
3.3k
views
transcript count after string tie merge
rna-seq stringtie
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 90
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