Haplotypes analysis from SNP chip data

Question

[rthapa]

Hi,

I want to do Haplotypes analysis and comparison of different genotypes from SNP chip data. Do you have any suggestion on the tools that I can use for?

Thanks

Answer 1

[Kevin Blighe]

Sure, I will suggest PLINK and HaploView. PLINK is a general 'all rounder' for SNP analyses (that is, a program with much functionality); HaploView will identify haplotypes and haploblocks in your data.

Kevin