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Copy number variation data for population structure analysis

Hi,

Does anyone have any idea if there is any tool available to detect population structure from copy number data rather than SNP data?

Thanks

cnv
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updated by Siyuan Feng • Siyuan Feng • written by rthapa • rthapa

1 answer

Maybe this can help : Schrider, DR, Hahn, MW, and Begun, DJ. (2016) Parallel Evolution of Copy-Number Variation Across Continents in Drosophila melanogaster. Molecular Biology and Evolution. 33: 1308-1316.

And their scripts : https://github.com/andrewkern/poolDiffCNV

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written by khalid.belkhir • khalid.belkhir

Thanks for sharing the link!

I was looking for code implementation of the Schrider method, too. And this method is probably the only one that is designed for analyzing pooled sequencing data.

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written by Siyuan Feng • Siyuan Feng

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