Jointly Detect Somatic Copy Number Variations

Hi,

Is there any good tools to jointly detect somatic copy number variations (like some tools for SNVs) from tumor-normal paired sequencing data? If not, how can I detect somatic copy number variations using existing common CNV detecting tools?

Thanks

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updated 12.6 years ago by Chris Miller 2.2K • | written 12.6 years ago by lyz10302012 49

Did you read?

what are the 'copy number detection' tools out there for exome capture NGS data.

Copy Number Variation (CNV) detection using single-end sequencing data

Copy number variation tools for illumina HiSeq paired end data (whole genome)?

What is the best pipeline for human whole exome sequencing?

Detection of Copy Number Variation between two groups using whole-genome NGS paired reads and so on.

• 193 views • link

written 12.6 years ago by Jimbou 96

Closing this question, as there are many existing threads that answer exactly this query, some of which are linked by Jimbou below.

• 0 views • link

written 12.6 years ago by Chris Miller 2.2K

0 answers

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