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0 votes
0 replies
532 views
Comparison of biodiversity between two locations with a known maximum number of species
shannon ecologie statistics biodiversity
written by y. 0
1 vote
4 replies
1.5K views
Boxplot with adjustment for variable
r boxplot
updated by zx8754 1.2K • | written by Nona 9
1 vote
0 replies
834 views
What is the right choice of normalization and preprocessing before WGCNA using RNAseq data in a cohort?
normalization rna_seq cohort wgcna
written by sukeshinik5 5
0 votes
5 replies
3.0K views
VCF file generated by Gridss not recognised by VEP
ngs variant-calling vep gridss
updated by Sunnywy0808 0 • | written by Reda 0
0 votes
1 reply
1.1K views
What is more important for Structural Variant Calling? Recall or Precision?
structural-variants merging precision-recall
updated by GenoMax 16K • | written by Luke 0
0 votes
2 replies
1.2K views
Reference genome size for genome size estimation.
genome-size
updated by Ram 4.5K • | written by Shakunthala Natarajan 2
0 votes
2 replies
1.0K views
Unexpected High T-Base Content in scRNA-seq Fastq Files and GC Bias Correction
fastq fastqc scrna-seq quality-control
written by Cooper 0
2 votes
4 replies
5.7K views
Which Should Take Priority When Selecting DEGs: FDR or Log Fold Change?
deseq2 logfc fdr degs edger
written by bioinfo1994 2
0 votes
3 replies
1.4K views
batch correction limma package (bead based assay data)
batch-correction
updated by ATpoint 9.1K • | written by MC_J 0
0 votes
5 replies
6.8K views
Limma: is it necessary to log-transform the data?
proteomics limma
updated by Gordon Smyth 916 • | written by eodmacmd 0
0 votes
9 replies
2.2K views
I need help with this R script. Thanks.
r
updated by Ram 4.5K • | written by nuorain 4
1 vote
2 replies
1.4K views
Illumina RNA-seq: Overrepresented sequences are mostly in the R2 reads, not R1
illumina rrna rnaseq rna
updated by GenoMax 16K • | written by Umberto 1
0 votes
3 replies
1.9K views
Using DNA Methylation Data as Input for ChromHMM
chromhmm methylation dna
written by luminea 2
0 votes
3 replies
1.4K views
STRUCTURE runs failing: core dumping and slurm exit code 10?
slurm linux structure
updated by GenoMax 16K • | written by katherinedrotos 0
0 votes
1 reply
834 views
Comparing whole transcriptome under one condition to the transcriptomes under other conditions
transcriptomics
updated by dthorbur 350 • | written by Texx 4
0 votes
0 replies
1.1K views
News: Machine Learning for Multi-Omics Integration (online course) -January 13-15, 2025
machine-learning big-data multi-omics data-integration deep-learning
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
3 replies
1.7K views
How to make DiffBind Run Faster?
diffbind atac-seq
updated by jared.andrews07 1.9K • | written by B.N. 1
0 votes
3 replies
1.3K views
validation approach for CNVs
cnv
updated by WouterDeCoster 4.8K • | written by heureuse 1
0 votes
0 replies
770 views
Advisable to perform GSVA on single cells?
gsva scrna-seq
written by bio_info 2
0 votes
0 replies
473 views
Small rna library analysis
sirna small-rna
updated by Ram 4.5K • | written by martta95 1
0 votes
1 reply
837 views
Statistical test to be used for dataset
biostatistics statistical-test
updated by allingt 4 • | written by odi 3
1 vote
2 replies
1.6K views
Questions Regarding Normalization and Standardization in RNA-seq Differential Analysis
rna-seq normalization
updated by Ram 4.5K • | written by wdasda122 1
0 votes
0 replies
674 views
IGV - Load custom variant track
vcf igv react
written by sadapas 0
0 votes
1 reply
1.1K views
Why are the SINEs annotated as zero when using RepeatModeler + RepeatMasker?
sines repeatmodeler repeatmasker
updated by Michael Dondrup 5.6K • | written by mut 0
0 votes
0 replies
657 views
ucsc table browser
ucsc
written by daffodil 1
0 votes
2 replies
1.7K views
Question about various of graph format. How to get the sequence and source of a specific node?
vg
written by chuanj8848 0
0 votes
0 replies
610 views
Facing problems in analysis of bisulfite sequencing data
sequencing bisulfite
updated by GenoMax 16K • | written by SHREYA 0
0 votes
2 replies
1.1K views
Can anyone share with me the R code for GSEA analysis?
r code gsea
updated by GenoMax 16K • | written by nuorain 4
0 votes
2 replies
1.3K views
extracting reads from FASTA/FASTQ file
rna-seq rna
updated by GenoMax 16K • | written by bleven 0
0 votes
0 replies
56 views
Forum: biotech
biotech
updated by Arup Ghosh 402 • | written by Dara 1
0 votes
0 replies
1.2K views
Forum: epitope-TCR binding prediction, vaccine design
vaccine epitope-tcr binding
written by Dara 1
1 vote
1 reply
1.2K views
How to use lme4() to perform differential expression on bulk RNA seq data with multiple random effects?
bulkrnaseq lme4
updated by ATpoint 9.1K • | written by bioyas 2
0 votes
1 reply
1.1K views
DeSeq2 filter transcripts
deseq2 rna-seq rna
updated by seidel 1.1K • | written by bleven 0
0 votes
0 replies
553 views
Setting up a case control with 18 VCFs in plink?
case-control plink wgs
written by atopasn1 0
0 votes
1 reply
924 views
Aligning to transcriptome with STAR generates error in Salmon sequence length
star salmon rnaseq
updated by Dunois 301 • | written by Lena 0
0 votes
1 reply
844 views
Gnomad result tables column meaning.
gnomad annotation
updated by Pierre Lindenbaum 17K • | written by ijarne 3
1 vote
4 replies
1.9K views
DESeq2: adjusted p-values become NA when sub-setting samples
r deg rna-seq deseq2
updated by GenoMax 16K • | written by txema.heredia 31
0 votes
2 replies
1.6K views
Trouble with Biopython residue depth
proteins depth biopython residue
updated by Wayne 208 • | written by Anand KR 0
0 votes
2 replies
911 views
all genes have negative logFC edgeR
edger
updated by rfran010 174 • | written by xiaoyongli407 0
0 votes
2 replies
1.3K views
Split vcf file to fit tbi requirements
snp haplotypecaller vcf gatk
written by cassandriatayfernandez 0
1 vote
0 replies
596 views
Dealing with indels in a fungal ITS2 MSA
indels its2 msa alignment
written by Sergio A.S. 1
0 votes
1 reply
1.3K views
GPU-accelerated multiple sequence alignment tools
multiple-sequence-alignment
updated by Ram 4.5K • | written by jet 0
0 votes
6 replies
2.2K views
WGCNA package.
rna-seq wgcna
written by Jaber 3
0 votes
0 replies
434 views
Paired splsda
splsda
updated by Ram 4.5K • | written by michelafrancesconi9 3
0 votes
3 replies
1.1K views
Mapping to transcriptome without gtf annotation
transcriptome mapping assembly
updated by Michael Dondrup 5.6K • | written by ZuelTech 0
0 votes
1 reply
940 views
Getting data from NCBI using Python
ensembl pyensembl rna-seq
updated by Ram 4.5K • | written by Quân 0
1 vote
6 replies
2.3K views
Mapping all 32-mers within Hamming Distance = 3
hamming alignment kmer ngs short
updated by mourisl 3 • | written by giova34 1
0 votes
0 replies
616 views
How to work with Low allele Depth Variants in Strelka Variant caller
strelka allelic-depth low-gqx
updated by Ram 4.5K • | written by abhishekghadge 4
0 votes
1 reply
1.7K views
What is the meaning of 'a too large, ITMAX too small in gamma countinued fraction (gcf)'
meta-analysis metal gwas
updated by Ram 4.5K • | written by ymberzal 0
0 votes
0 replies
2.1K views
METAL meta-analysis software crash
metal meta-analysis gwas
updated by Ty 0 • | written by ydadmehr 0
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