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0 votes
0 replies
1.1K views
How to calculate F statistic in Mendelian Randomization?
mendelian-randomization f-statistic snp gwas
updated by Ram 4.5K • | written by Luke 0
0 votes
2 replies
1.3K views
SIngle cell analysis
scrna-seq findvariablefeatures seurat
written by JY 0
0 votes
0 replies
583 views
Extract mitochondrial contigs from draft contig-level genome using BLASTn
filtering mitochondrial contig blastn
written by anna_shin 0
0 votes
10 replies
3.4K views
Does mageck-vispr calculate differently than mageck?
mageck mageck-vispr pooled-screen cripsr
written by Assa Yeroslaviz 197
0 votes
4 replies
1.4K views
Issues with pGIG : Negative probability and unexpected P value order
r distribution gamlss fitting
written by jayeshkumarsundaram 1
0 votes
0 replies
392 views
Bismark M-bias plot spikes in R2
methyl-seq
written by hj 0
0 votes
1 reply
826 views
Conda Environment Issue
conda python yaml environments dependencies
updated by Ernest Bonat 3 • | written by cthangav 11
0 votes
1 reply
971 views
How to fix this error, please help.
lasso
updated by LChart 518 • | written by nuorain 4
0 votes
1 reply
713 views
Tool: I Built a Website That Summarizes Your Research with 5 Emojis
web students career academia research offtopic
updated by Ram 4.5K • | written by bitsofadventures 4
0 votes
8 replies
2.3K views
Question on batch effect for a bulk RNA seq analysis
rna-seq batch-effect
written by akb 0
0 votes
2 replies
917 views
CCLE Cell lines annotations
ccle_id
updated by yura.grabovska 94 • | written by Ivan 1
0 votes
6 replies
5.8K views
How do I calculate read depth of sequencing?
illumina read-depth wgs
updated by mazegriff 10 • | written by Madde 2
0 votes
1 reply
988 views
Unable to install VirSorter - Stuck on "Solving environment"
virsorter virsorter2 conda bioconda
updated by Pierre Lindenbaum 17K • | written by boone5jones 2
1 vote
3 replies
1.4K views
Use of gVCF by clinical sequencing labs
gvcf
updated by Jeremy Leipzig 2.3K • | written by bdolin 10
0 votes
0 replies
533 views
News: ONLINE COURSE – Introduction to Machine Learning using R and Rstudio (IMLR02)
machine-learning
updated by Ram 4.5K • | written by oliverhooker 14
0 votes
0 replies
556 views
News: ONLINE COURSE – Introduction to Single Cell Analysis (ISCA01)
single-cell scrna-seq
updated by Ram 4.5K • | written by oliverhooker 14
0 votes
2 replies
977 views
What to do if I have both pre-treatment AND WT samples from a CRISPRscreen to analyse
crispr mageck crisprscreen screening
written by chrisgr 2
0 votes
1 reply
634 views
Can VST be called Log2 expression in a paper?
deseq2
updated by ATpoint 9.1K • | written by BioSci 0
0 votes
5 replies
2.0K views
Adapter removal using cutadapt and multiqc report:
cutadapt adapter multiqc illumina fastes
updated by mazegriff 10 • | written by ayeraselvan 1
0 votes
2 replies
829 views
Circos tool
karyotype circos
written by naveennavinbeast 0
0 votes
1 reply
1.1K views
Feature Counts: low assigned alignments (1.9%) with -s 0: Unstranded option any assigned alignments with -s 2: reversely strandedoptionts
alignments rna-seq
updated by Ram 4.5K • | written by francesca.catellani 0
0 votes
6 replies
1.3K views
0-based or 1-based file format using R pipeline?
1-based 0-based r
updated by Ram 4.5K • | written by Sophia 0
0 votes
6 replies
1.7K views
merging of two assemblies from different short-reads techniques
hybrid illumina assembly dnbseq
updated by GenoMax 16K • | written by Andrew Yu 0
0 votes
4 replies
981 views
Extracting orthologues from MSA
msa
written by Christos 0
0 votes
0 replies
355 views
AS for KEGG analysis
rnaseq
written by SHIRUI 1
1 vote
10 replies
2.5K views
How to handle RNA seq data with unbalanced % rRNA by group?
fastqscreen rrna deseq2 rnaseq dge
updated by Carlo Yague 906 • | written by ev97 4
0 votes
8 replies
2.0K views
genome annotation and GFF file formation
metaeuk gff whole-genome-annotation
updated by Juke34 949 • | written by manaswiniparija3 6
0 votes
0 replies
615 views
how to calculate te RSA values of each residue of a protein using DSSP?
rsa proteins
updated by Ram 4.5K • | written by raul enrique 0
1 vote
2 replies
1.3K views
Outlier after DEseq2 in meta-analysis
meta-analysis rna-seq outlier deseq2
written by a.stef.44 1
0 votes
0 replies
774 views
Optimizing mutect/sarek for somatic substitution variant calling
mutect2 tumor-normal sarek variant-calling
updated by Ram 4.5K • | written by ramiro.barrantes 6
0 votes
2 replies
1.5K views
Appropriate minimum gene set size for gene set enrichment analysis
htsanalyzer gsea fgsea
written by Nona 9
0 votes
0 replies
626 views
News: Course - Introduction to the Analysis of Longitudinal Data in Biology Using R
longitudinal-data r epidemiology forecasting gene-expression
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
733 views
missing data in ChromHMM
chromhmm
updated by LChart 518 • | written by luminea 2
0 votes
1 reply
569 views
Help on encode accessions
encode
updated by GenoMax 16K • | written by tsomakiank 5
0 votes
14 replies
2.5K views
Choosing the best representative transcript for a gene
transcript
written by ZuelTech 0
1 vote
1 reply
1.7K views
Seurat Xenium QC
r xenium spatial seurat
updated by Bastien Hervé 680 • | written by yura.grabovska 94
0 votes
4 replies
1.3K views
gtf files for various organism in ucsc
gtf
written by 1769mkc 127
0 votes
3 replies
1.3K views
PyMOL scripting with GPUs on LSF
pymol hpc pse lsf structure
updated by GenoMax 16K • | written by noodle 65
0 votes
2 replies
1.3K views
Cluster regions based on similar/dissimilar ChIP-seq signal profile across the whole region and not just overall mean signal.
clustering chip-seq deeptools
updated by Ming Tommy Tang 469 • | written by rls_08 4
0 votes
4 replies
1.6K views
What is wrong with my scripts?
r gdc tcgabiolinks bioconductor
updated by Ming Tommy Tang 469 • | written by nuorain 4
0 votes
3 replies
1.2K views
cnvpytor run problem
cnvpytor
updated by yura.grabovska 94 • | written by hamideh 2
0 votes
6 replies
2.4K views
PCA for count data
pca
written by QX 9
2 votes
2 replies
971 views
cnv_facets run problem
r cnv_facets
written by hamideh 2
0 votes
15 replies
2.9K views
Merge VCF files by chromosome and Across samples
gatk picard mergevcf vcftools
written by Maverick 1
0 votes
0 replies
586 views
News: Genomic Data Visualisation in R (online course)
data-visualisation genomic-data r
written by Physalia-courses 281
0 votes
9 replies
2.3K views
miRNA mapping with bowtie2 gives low alignment %
bowtie2 alignment mirna
written by Ant 5
0 votes
3 replies
1.8K views
What does fully overlapping supplementary alignments mean?
alignment nanopore minimap2
updated by Michael Dondrup 5.6K • | written by njornet 2
0 votes
6 replies
1.6K views
Germline variants in Cancer
cancer tumor-normal germline-variant
written by prs 2
0 votes
7 replies
5.1K views
Unexplainable missing values in single cell Seurat object
seurat single-cell
updated by Ram 4.5K • | written by Gerard 2
0 votes
5 replies
2.6K views
why do I get this error while reading single cell RNA seq data in R
scrna-seq
written by nuorain 4
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