How can I get B factor value of a specific amino acid of a protein sequence, from DSSP? https://swift.cmbi.umcn.nl/gv/dssp/ It seems no functions/buttons that could …

I am trying to get RSA through the DSSP module of PDB by using : from Bio.PDB import * parser = PDBParser() io = PDBIO() …

I am extracting secondary structural information from PDB files using DSSP with Biopython. For a specific PDB file (1YYJ), I am getting KeyError: ('A', (' …

Hello. I ran this code below from Bio.PDB import * parser = PDBParser() io = PDBIO() structure = parser.get_structure('3F9R', '3F9R.pdb') model = structure[0] dssp = …

Hello I am working with PDB files in biopython, and I need a quick way to calculate the relative solvent accessibility (RSA) of each residue …

I have a large dataset of Uniprot-Accessions for proteins. If I look at a specific position in these protein's sequences, I want to know if …

I have 900 PDBs and I would like calculate the propensity values of amino acids in different secondary structures which are got by sstruc program. …

I want to get the accessible surface area for each residue of a protein structure. I need to do that for biological assembly and remove …

<p>Dear all, </p> <p>Do anyone knows about a Java API I could use to calculate the available surface area of a residue based on the …

<p>I want to know how to call Blast from java code, I have wildtype residue, mutant residue, position of mutation, and protein sequence</p> <p>I want …