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westin.kosater
westin.kosater
Reputation:
80
Joined:
7.8 years ago
Last seen:
7.2 years ago
Latest posts by user
3 votes
4 replies
7.9K views
Trying to separate different chains of a PDB file into separate files. Biopython gives an error
python biopython
updated by manu.llanos • manu.llanos • written by westin.kosater • westin.kosater
0 votes
0 replies
2.0K views
Python SearchIO: Extracting information from QueryResults?
python blast xml
written by westin.kosater • westin.kosater
1 vote
2 replies
3.0K views
Want to loop through list of BLAST objects in python
biopython blast python
updated by finswimmer finswimmer • written by westin.kosater • westin.kosater
0 votes
0 replies
0 views
Comment: C: CUFFLINKS error: Warning: invalid start coordinate at line:
written by westin.kosater • westin.kosater
0 votes
1 reply
0 views
Answer: C: CUFFLINKS error: Warning: invalid start coordinate at line:
written by westin.kosater • westin.kosater
0 votes
4 replies
3.2K views
CUFFLINKS error: Warning: invalid start coordinate at line:
chip-seq
written by westin.kosater • westin.kosater
1 vote
2 replies
4.4K views
Biopython module Bio.PDB.DSSP issue with solvent accessible surface area?
python biopython pdb dssp
updated by dmitriy.bobrovnikov • dmitriy.bobrovnikov • written by westin.kosater • westin.kosater
0 votes
1 reply
4.9K views
Make a multiple sequence alignment with a HMMER hmmsearch output?
hmmer
updated by h.mon h.mon • written by westin.kosater • westin.kosater
1 vote
0 replies
2.0K views
Trying to interpret the content of a hmm file from HMMER3
hmmer
written by westin.kosater • westin.kosater
0 votes
1 reply
1.8K views
Python: I have a list of probabilities, and I want to use them to generate mutations in a protein sequence
python pdb dssp
updated by e.benn e.benn • written by westin.kosater • westin.kosater
0 votes
2 replies
2.2K views
List of sequences in a fasta file. I need to generate the reverse complement for each of them.
biopython python
updated by JC JC • written by westin.kosater • westin.kosater
0 votes
2 replies
2.7K views
Getting an error whilst trying to import Biopython SeqIO
python biopython
written by westin.kosater • westin.kosater
0 votes
1 reply
2.6K views
Putting atomic coordinates from PDB file into Pandas dataframe?
pandas python pdb
updated by Ram Ram • written by westin.kosater • westin.kosater
0 votes
1 reply
1 view
Comment: C: Creating a distance matrix from PDB file coordinates (Python)
written by westin.kosater • westin.kosater
0 votes
5 replies
5.0K views
Creating a distance matrix from PDB file coordinates (Python)
pdb python
updated by Joe Joe • written by westin.kosater • westin.kosater
1 vote
1 reply
0 views
Comment: C: How do I download and install DSSP?
written by westin.kosater • westin.kosater
1 vote
3 replies
20K views
How do I download and install DSSP?
dssp python biopython
updated by Joe Joe • written by westin.kosater • westin.kosater
0 votes
6 replies
3.0K views
Trying to use regular expressions to edit a PDB text file.What am I doing wrong?
python biopython regex
updated by Joe Joe • written by westin.kosater • westin.kosater
0 votes
0 replies
1 view
Comment: C: How can I use biopython to extract each alpha carbon from a PDB file?
written by westin.kosater • westin.kosater
0 votes
2 replies
6.2K views
How can I use biopython to extract each alpha carbon from a PDB file?
python biopython pdb
written by westin.kosater • westin.kosater
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