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Qingyang Xiao
Qingyang Xiao
Reputation:
160
Joined:
8.7 years ago
Last seen:
3.6 years ago
Location:
Sweden
Latest posts by user
0 votes
0 replies
812 views
How to genome-wide association analysis using survival analysis in Plink?
survival gwas plink
written by Qingyang Xiao Qingyang Xiao
0 votes
2 replies
1.1K views
How to get the number of distinct variants genotyped from VCF or bed/bim files (GWAS)?
plink bed gwas vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Qingyang Xiao Qingyang Xiao
0 votes
1 reply
1.1K views
Can B factors only be calculated from experimentally determined protein structures (e.g. pdb files)?
b-factor pdb protein-structure
updated by Ram Ram • written by Qingyang Xiao Qingyang Xiao
0 votes
0 replies
791 views
How to get evolutionary conservation score
protein proteomics evmutation evolutionary conservation
written by Qingyang Xiao Qingyang Xiao
0 votes
1 reply
0 views
Comment: Comment: How to extract all the IDs of VCF file for GWAS analyses?
written by Qingyang Xiao Qingyang Xiao
0 votes
6 replies
2.9K views
How to extract all the IDs of VCF file for GWAS analyses?
vcf gwas id sample
updated by Kevin Blighe Kevin Blighe • written by Qingyang Xiao Qingyang Xiao
0 votes
1 reply
1.2K views
Should homozygotes and heterozygotes be considered differently in GWAS analyses?
homozygote gwas heterozygote
updated by LauferVA LauferVA • written by Qingyang Xiao Qingyang Xiao
0 votes
0 replies
685 views
Are the mixed populations of different ancestries problematic for GWAS analyses?
plink population structure gwas pca
written by Qingyang Xiao Qingyang Xiao
0 votes
1 reply
0 views
Comment: Comment: How to extract info of samples of interest from VCF file?
written by Qingyang Xiao Qingyang Xiao
0 votes
3 replies
1.8K views
How to extract info of samples of interest from VCF file?
unix vcf subset command gwas
updated by Kevin Blighe Kevin Blighe • written by Qingyang Xiao Qingyang Xiao
0 votes
2 replies
1.8K views
How to check the quality of VCF file for GWAS analysis
vcf gwas control quality
updated by raphael.B • raphael.B • written by Qingyang Xiao Qingyang Xiao
0 votes
0 replies
0 views
Comment: Comment: How can I get B factor value of a specific amino acid of a protein sequence, fro
written by Qingyang Xiao Qingyang Xiao
0 votes
3 replies
6.3K views
How can I get B factor value of a specific amino acid of a protein sequence, from DSSP?
dssp temperature protein factor b-factor
written by Qingyang Xiao Qingyang Xiao
0 votes
2 replies
5.7K views
LOFTEE doesnt actually annotate Loss-of-function variants
genome snp vep ensembl
written by Qingyang Xiao Qingyang Xiao
0 votes
1 reply
0 views
Comment: C: Download hundreds of genes' variant csv from gnomAD
written by Qingyang Xiao Qingyang Xiao
0 votes
0 replies
1.3K views
dbSNP allele reference
snp genome assembly
written by Qingyang Xiao Qingyang Xiao
2 votes
7 replies
7.7K views
Download hundreds of genes' variant csv from gnomAD
genome snp
updated by Kalin • Kalin • written by Qingyang Xiao Qingyang Xiao
0 votes
0 replies
1.5K views
Targeted sequencing and meQTL/eQTM/eQTL
snp rna-seq r next-gen
written by Qingyang Xiao Qingyang Xiao
1 vote
24 replies
9.1K views
Forum: Python or R
rna-seq alignment next-gen-sequencing
updated by Ram Ram • written by Qingyang Xiao Qingyang Xiao
1 vote
24 replies
39K views
How to read fastq file with Python
sequencing next-gen
updated by Alex Reynolds Alex Reynolds • written by Qingyang Xiao Qingyang Xiao
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