Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
186 results • Page
3 of 4
Sort: Views
Rank
Views
Votes
Replies
0
votes
2
replies
195
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 3 days ago by
Adam
▴ 30 • written 3 days ago by
Darya
• 0
0
votes
2
replies
195
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
3 days ago by
Nicholas
• 0
0
votes
2
replies
190
views
Presence of unknown sites in ANNOVAR output file
ANNOVAR
updated 1 day ago by
Ram
43k • written 2 days ago by
sainavyav22
• 0
1
vote
2
replies
183
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
3 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
180
views
CellPhoneDB results
cellphonedb
cpdb
cell_surface_proteins
updated 5 days ago by
GenoMax
142k • written 11 weeks ago by
piotto
▴ 20
0
votes
1
reply
179
views
Enhanced Volcano-Cut off
foldchange
enhancedvolcano
updated 2 days ago by
marco.barr
▴ 100 • written 3 days ago by
odi
▴ 10
3
votes
3
replies
177
views
what is another word for a BLAST "hit"?
blast
alignment
1 day ago by
dec986
▴ 380
2
votes
2
replies
176
views
Where to get the following bed file?
WES
bed
reference
file
updated 5 days ago by
GenoMax
142k • written 5 days ago by
wyuan37
• 0
1
vote
2
replies
175
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
4 days ago by
robert.flynn.21
• 0
1
vote
0
replies
174
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
2 days ago by
eebloom
▴ 80
0
votes
1
reply
172
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 4 days ago by
ATpoint
82k • written 5 days ago by
MAPK2
▴ 40
2
votes
2
replies
172
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
4 days ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
170
views
Genome Assembly task + Protein Translation, assignment advice on a question
sequence-analysis
protein-synthesis
18 hours ago by
rackbersingh
• 0
0
votes
3
replies
170
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 4 days ago by
GenoMax
142k • written 4 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
3
replies
169
views
Tassel 5 GBS: Is there something wrong with my fastqs?
tassel
fastq
gbs
updated 1 day ago by
GenoMax
142k • written 1 day ago by
meck
• 0
6
votes
2
replies
168
views
EdgeR - relationship between logFC and coefficients
differential-expression
r
edger
updated 1 day ago by
Gordon Smyth
★ 7.1k • written 2 days ago by
gBioStar5
▴ 10
0
votes
2
replies
167
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
3 days ago by
njornet
▴ 20
0
votes
1
reply
166
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 3 days ago by
marco.barr
▴ 100 • written 3 days ago by
elisheva
▴ 120
0
votes
0
replies
166
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
2 days ago by
Winter
• 0
0
votes
2
replies
164
views
LncRNA Nomenclature
ENST
nomenclature
lncrna
GBB
ENSG
1 day ago by
jain72744
▴ 10
7
votes
1
reply
163
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 4 days ago by
dariober
14k • written 4 days ago by
nhaus
▴ 360
1
vote
1
reply
163
views
student
epitranscriptomics
updated 4 days ago by
ATpoint
82k • written 4 days ago by
useriwa
• 0
0
votes
1
reply
158
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
updated 1 day ago by
curious
▴ 750 • written 1 day ago by
SeoGyun
• 0
0
votes
1
reply
154
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 1 day ago by
ATpoint
82k • written 2 days ago by
Amr
▴ 160
1
vote
0
replies
152
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 5 days ago by
zx8754
11k • written 8 days ago by
Emilie
▴ 10
0
votes
2
replies
151
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 3 days ago by
GenoMax
142k • written 3 days ago by
madders73
• 0
0
votes
0
replies
151
views
What is workflow for de-novo assembling of nuclear and mito genomes of non-model organisms
de-novo
WGS
DNA-seq
assembling
2 days ago by
Matvii Mykhailichenko
• 0
1
vote
0
replies
147
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
5 days ago by
Biostar
2.7k
0
votes
1
reply
145
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 3 days ago by
Bastien Hervé
5.3k • written 4 days ago by
sooni
▴ 20
0
votes
1
reply
145
views
DESeq2 error
DESeq2
updated 1 day ago by
ATpoint
82k • written 2 days ago by
sooni
▴ 20
0
votes
0
replies
139
views
Chance for trained without experience
bio
updated 3 days ago by
ATpoint
82k • written 3 days ago by
shehab
• 0
3
votes
1
reply
139
views
Question about methylation location
Methylation
WGBS
bisulfide
updated 1 day ago by
dthorbur
★ 1.9k • written 2 days ago by
Eren
• 0
1
vote
1
reply
137
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 2 days ago by
andres.firrincieli
3.6k • written 2 days ago by
kacollier
▴ 30
0
votes
1
reply
135
views
Kraken2 database
kraken
microbialdb
database
krakendb
kraken2
updated 7 hours ago by
Mathew
▴ 80 • written 1 day ago by
Christopher
• 0
0
votes
1
reply
135
views
input file for alternative splicing in rmats in linux
rmats
updated 2 days ago by
Ram
43k • written 2 days ago by
Lambodarswain316
• 0
2
votes
1
reply
134
views
Failed to open VCF file
GATK
sentieon
BWA-MEM
updated 16 hours ago by
Pierre Lindenbaum
161k • written 21 hours ago by
melissachua90
▴ 70
0
votes
0
replies
133
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
5 days ago by
belloy
• 0
0
votes
1
reply
133
views
Microbial Signal Transduction Database
MiST
updated 1 day ago by
zx8754
11k • written 1 day ago by
Shravani
• 0
0
votes
1
reply
132
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 5 days ago by
LChart
3.9k • written 5 days ago by
David
• 0
0
votes
1
reply
130
views
Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in python.
k
updated 8 hours ago by
fracarb8
★ 1.6k • written 17 hours ago by
beginner123
• 0
2
votes
1
reply
130
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
3 days ago by
analyst
▴ 50
0
votes
0
replies
129
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
6 days ago by
KHURRAM SHAHZAD
• 0
0
votes
1
reply
128
views
extract viral protein of interest from 10k whole viral genomes
nBLAST
viral-genome
updated 1 day ago by
Ram
43k • written 1 day ago by
Shwetha
• 0
1
vote
0
replies
128
views
What is Deepvariant default filtering values ?
vcf
calling
filter
variant
deepvariant
2 days ago by
Shae
▴ 10
1
vote
0
replies
127
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 5 days ago by
Pierre Lindenbaum
161k • written 5 days ago by
sarumonsus
▴ 10
0
votes
0
replies
122
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
6 days ago by
DGTool
• 0
5
votes
6
replies
121
views
Longest transcript variant per gene
transcript
longest
variant
orthofinder
updated 1 hour ago by
Mathew
▴ 80 • written 7 hours ago by
sansan_96
▴ 90
0
votes
0
replies
120
views
How to implement an IGV to streamlit app?
python
streamlit
igv
5 days ago by
avigail.shnaider
• 0
0
votes
1
reply
120
views
Alignment of samples with spike-in
alignment
multimapping
RNA-seq
ChIP-seq
spike-in
updated 1 day ago by
GenoMax
142k • written 1 day ago by
maria.soler
• 0
0
votes
0
replies
119
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
6 days ago by
Christopher
• 0
186 results • Page
3 of 4
Recent Votes
Comment: Longest transcript variant per gene
Answer: Longest transcript variant per gene
Answer: Longest transcript variant per gene
Comment: Longest transcript variant per gene
Comment: Longest transcript variant per gene
Answer: install package
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
Recent Locations •
All
United States,
4 minutes ago
College Station, TX,
4 minutes ago
Qingdao, China,
4 minutes ago
United States,
8 minutes ago
Brazil,
9 minutes ago
Russia,
12 minutes ago
Russia,
15 minutes ago
Recent Awards •
All
Popular Question
to
Kai_Qi
▴ 130
Popular Question
to
pramach1
▴ 40
Popular Question
to
vytarasov
▴ 180
Teacher
to
Carlo Yague
8.7k
Popular Question
to
beginner123
• 0
Popular Question
to
melissachua90
▴ 70
Popular Question
to
octpus616
▴ 100
Recent Replies
Comment: Longest transcript variant per gene
by
Mathew
▴ 80
I'm glad it worked well for you! Good luck with the rest of your project. I wish you the best.
Comment: Longest transcript variant per gene
by
sansan_96
▴ 90
Thanks so much
Comment: Longest transcript variant per gene
by
sansan_96
▴ 90
Hello again, It works very well, thank you very much for this solution.
Comment: Longest transcript variant per gene
by
sansan_96
▴ 90
Hello Mathew, Thanks for your answer, I'll try it and come back.
Answer: Longest transcript variant per gene
by
Mathew
▴ 80
Hi, why not write code to extract the longest variant? I copied these two in a txt file called "input.txt", and made three dummy variants …
Comment: Longest transcript variant per gene
by
GenoMax
142k
https://www.biostars.org/p/107759/<br> https://www.biostars.org/p/403649/ <!-- this is it -->
Answer: Kraken2 database
by
Mathew
▴ 80
Sorry, what analysis are you trying to perform with these databases? Based on your question, it appears you are using Kraken2 and Bracken.…
Comment: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
by
Mathew
▴ 80
I looked up a publication using CIBERSORT to see how they got the package, and indeed they acquired it through official website application…
Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py
by
fracarb8
★ 1.6k
If you are using R, you should check the liana R implementation (https://github.com/saezlab/liana).
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Thank you Pierre, I am going to take some time to get my head around this and report back if it works.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Thanks for the crosspost! Just trying to get things figured out.
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
by
ATpoint
82k
To the best of my knowledge, CIBERSORT is and has always and only been available via the official website application from Stanford. Whatev…
Comment: BioLabDonkey - new Mac program for molecular biologists
by
vytarasov
▴ 180
Update of BioLabDonkey - Version 5.6 - In silico PCR function is added.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
cross posted: https://stackoverflow.com/questions/78462732/ > Please mind that posting the same question to multiple sites can be perceive…
Comment: java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
by
Pierre Lindenbaum
161k
command is missing, version is missing.
Traffic: 1048 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6