Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
11,722 results • Page
3 of 235
Sort: Rank
Rank
Views
Votes
Replies
4
votes
6
replies
349
views
Error with BiocParallel. No barcodes files found
Barcodes
scRNA-seq
SingleCellExperiment
5 days ago by
bio_info
▴ 20
3
votes
3
replies
239
views
Unexpected read length from NGS
NGS
Illumina
4 days ago by
QX
• 0
1
vote
7
replies
406
views
samtools write-index
samtools
2 days ago by
R.L.
• 0
2
votes
3
replies
319
views
How do we do quantification using stringtie merge option for all the merged samples generated.
stringtie
quantification
1 day ago by
Varsha
• 0
3
votes
2
replies
187
views
How to interpret this plotMDS of three disease clusters?
microarray
plotMDS
DEGs
updated 5 days ago by
ATpoint
82k • written 5 days ago by
egascon
• 0
0
votes
0
replies
95
views
GWAS or QTL mapping in RIL population
GWAS
RIL
5 days ago by
韩雨
• 0
0
votes
0
replies
99
views
VEP annotation tool: "." isn't numeric in addition (+)
VEP
VCF
updated 5 days ago by
Ram
44k • written 5 days ago by
emmanouil.a
▴ 120
11
votes
13
replies
6.8k
views
7 follow
log2 fold change in RNA-seq analysis
fold
log2
change
updated 5 days ago by
May Ling
• 0 • written 2.4 years ago by
wmsalsah
▴ 10
0
votes
1
reply
274
views
GWAS Phenotypes
GWAS
updated 5 days ago by
韩雨
• 0 • written 6 weeks ago by
solomoncharles77
▴ 90
5
votes
4
replies
5.2k
views
6 follow
Classic threshold for log2 fold change in RNA-seq experiment
RNA-Seq
updated 5 days ago by
May Ling
• 0 • written 3.9 years ago by
Mozart
▴ 330
1
vote
1
reply
142
views
Cellranger-multi : Demultiplexing and Analyzing 5’ Immune Profiling Libraries Pooled with Hashtags
5InmuneProfiling
nf-core
scRNAseq
cellranger-multi
Nextflow
updated 5 days ago by
GenoMax
142k • written 5 days ago by
azeu
▴ 10
0
votes
0
replies
67
views
Assigning Micro-C read pairs to nucleosomes called from MNase-seq data?
Hi-C
MNase-Seq
6 days ago by
Linus
• 0
7
votes
3
replies
13k
views
Z score in RNAseq
RNA-Seq
Zscore
updated 6 days ago by
Akash D
▴ 60 • written 6.5 years ago by
rob.costa1234
▴ 310
0
votes
1
reply
158
views
Free AI for R programming
R
updated 5 days ago by
Ram
44k • written 6 days ago by
mohamadzare6022
▴ 10
7
votes
13
replies
853
views
7 follow
Forum:
Ideal PC configurations and operating system for bioinformatics laboratory
PC
updated 5 days ago by
i.sudbery
19k • written 5 weeks ago by
Estevão
▴ 10
0
votes
0
replies
106
views
Extracting haplotype-specific annotations from splicing graph
vg
6 days ago by
Juhyun
• 0
0
votes
0
replies
97
views
miloR - object 'as.SimpleList' of mode 'function' was not found when running calcNhoodDistance
scRNA-seq
seurat
miloR
6 days ago by
shuaizh117
▴ 10
0
votes
0
replies
98
views
Phyloseq returning black bars for plot_bar
phyloseq
bioconductor
R
6 days ago by
Jacob
• 0
3
votes
8
replies
887
views
Random Access remote BAM files
htslib
BAM
updated 6 days ago by
a.penatauber
• 0 • written 3 months ago by
Lucas R.F.
▴ 20
0
votes
0
replies
99
views
Cancer vs Normal Cell Classification Based on SNVs
cancer
6 days ago by
dglad
• 0
0
votes
4
replies
231
views
merge overlaps and remove non overlap genomic windows
BED
intersection
overlap
6 days ago by
reza
▴ 300
0
votes
1
reply
150
views
Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
RNAseq
updated 6 days ago by
GenoMax
142k • written 6 days ago by
Fossil
• 0
1
vote
2
replies
251
views
Construction of circos plot from WGS data
WGS
Circos
5 days ago by
Anitha
▴ 10
1
vote
3
replies
244
views
Trimmomatic running but files containing purged reads are empty
fastqc
fastq
trimmomatic
updated 6 days ago by
GenoMax
142k • written 6 days ago by
Wilber0x
▴ 50
0
votes
0
replies
111
views
How to find nucleotide changes and the predicted effect when comparing two genomes
BLAST
alignment
updated 6 days ago by
Ram
44k • written 6 days ago by
Melissa
• 0
5
votes
3
replies
217
views
FastQC interpretation - 16S sequencing
interpretation
amplicon
Fastqc
16S
updated 6 days ago by
GenoMax
142k • written 6 days ago by
Christopher
▴ 10
0
votes
0
replies
126
views
Subset of ATAC-seq peaks has high variance
atac-seq
edgeR
R
normalization
6 days ago by
Tim
• 0
2
votes
6
replies
336
views
How to get the ratio of allele counts from GATK derived VCF file?
Freebayes
GATK
SNP
VCF
6 days ago by
anikcropscience
▴ 230
0
votes
0
replies
105
views
KEGG pathway enrichment analysis in Zea mays with R
KEGG
Zea-mays
R
updated 6 days ago by
Ram
44k • written 6 days ago by
letizia.ottaviani
• 0
0
votes
6
replies
300
views
from CRAM to fastq
FASTQ
WGS
CRAM
updated 6 days ago by
ATpoint
82k • written 6 days ago by
machaalani29
• 0
0
votes
0
replies
105
views
News:
Bioinformatic Analysis of Transposable Elements course
Genome-Annotation
TE
Manual-Curation
Transposable-Elements
updated 6 days ago by
Ram
44k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
135
views
No output when converting transcript IDs to gene symbols
RNA-seq
updated 6 days ago by
Ram
44k • written 6 days ago by
ashkan
▴ 160
3
votes
2
replies
213
views
vg autoindex seems stuck after a week of running
vg
pangenome
1 day ago by
StevieP
▴ 10
0
votes
3
replies
307
views
Kraken2 Custom Database non-deterministic results
Metagenomics
kraken2
updated 7 days ago by
colindaven
6.4k • written 8 days ago by
Bjorn
• 0
0
votes
1
reply
159
views
How to get 2 seurat objects into a DEseq
Seurat
DEseq
updated 6 days ago by
Ram
44k • written 7 days ago by
He11oJe11o
• 0
0
votes
0
replies
92
views
Rescaling normalized enrichment score (NES)
heatmap
7 days ago by
CTLong
▴ 110
0
votes
3
replies
224
views
Splitting query fasta file for Diamond Blastp make the process faster?
DIAMOND
5 days ago by
kmat
• 0
0
votes
1
reply
158
views
Mapping difference with BWA
variant-calling
samtools
bam
BWA
genomics
updated 7 days ago by
ATpoint
82k • written 7 days ago by
rj.rezwan
• 0
0
votes
0
replies
105
views
Kegg Pathways to Circos
Genomics
KEGG
Circos
7 days ago by
dlera.lozano
▴ 10
0
votes
0
replies
123
views
DIFFBIND boxplot results, p value not significant
DiffBind
ChIP-seq
6 days ago by
RD
▴ 10
3
votes
6
replies
359
views
Problem in getting geo file through GEOQUERY
geoquery
Geo
updated 6 days ago by
Ram
44k • written 7 days ago by
anasjamshed
▴ 120
0
votes
1
reply
189
views
Multi-ploid data in ANGSD and NGSadmix
ancestry
diploid
haploid
admixture
updated 7 days ago by
andersdetermig
▴ 20 • written 8 days ago by
Christopher
• 0
0
votes
2
replies
444
views
transanno liftvcf "Error: length of chromosome [chr] is not equal to length in chain file. Are you using correct reference?"
liftover
transanno
7 days ago by
ezz3
• 0
1
vote
10
replies
651
views
Add stats to the plot
R
7 days ago by
Ghada
• 0
0
votes
4
replies
252
views
Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
GATK
UnifiedGenotyper
7 days ago by
shpak.max
▴ 50
2
votes
4
replies
285
views
Allele count of 2 for homoplasmic MT variants in VCF
Variant-Calling
GATK
VCF
6 days ago by
Arton
▴ 10
1
vote
3
replies
214
views
downloading chemical database from ChEMBL
ChEMBL
PyRMD
Virtual-Screening
updated 6 days ago by
GenoMax
142k • written 7 days ago by
s
• 0
0
votes
3
replies
196
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq
trimmomatic
updated 7 days ago by
GenoMax
142k • written 7 days ago by
bioinfo
▴ 150
3
votes
2
replies
192
views
Multiplexing for pooled CRISPR screen sequencing
multiplex
CRISPR-screen
Illumina
6 days ago by
Tuấn Anh
• 0
2
votes
4
replies
1.2k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
5 days ago by
Aspire
▴ 330
11,722 results • Page
3 of 235
Recent Votes
I cannot download VG in any way
Comment: I cannot download VG in any way
A: Bam File: Change Chromosome Notation
Answer: help in changing Y scale in R
Answer: Set the same Y scale for different plots
C: Demultiplexing reads with index present in the labels
C: Demultiplexing reads with index present in the labels
Recent Locations •
All
Norway,
1 minute ago
Hong Kong,
1 minute ago
Finland,
2 minutes ago
South Korea,
3 minutes ago
Spain,
3 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
6 minutes ago
South Korea,
6 minutes ago
Recent Awards •
All
Popular Question
to
hellokwmin
• 0
Autobiographer
to
mtabaka
▴ 20
Scholar
to
i.sudbery
19k
Popular Question
to
DareDevil
★ 4.3k
Popular Question
to
liorglic
★ 1.4k
Teacher
to
John Marshall
3.1k
Autobiographer
to
Nat.Nataren
▴ 20
Recent Replies
Comment: samsift can't find the AS tag to filter a bam file generated using bowtie2
by
Pierre Lindenbaum
162k
what is AS ? an attribute in a SAM record? Are you sure this is the way to access an attribute : `-f 'AS>94'` . Otherwise, just use `samt…
Comment: Filtering reads that map to both references
by
Pierre Lindenbaum
162k
see related : https://www.biostars.org/p/274183/
Comment: I cannot download VG in any way
by
dariober
14k
Downloading the binary as GenoMax (and the vgteam) suggests is most likely the best option. For the record, `git clone --recursive https://…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Sara
▴ 30
It was 10X data, and I processed it using Seurat. Then, I came to the point of Pseudobulk using DESeq2. Does this mean I have to check whi…
Comment: UMI-Tools knee-method has great influence on the results of white list
by
i.sudbery
19k
We recommend alecin where it supports the kit you are using. As far as I'm aware it doesn't support custom read geometry yet, but does supp…
Answer: NCBI vs Ensembl - Ortholog genes Information
by
b.contreras.moreira
▴ 200
Hi José, orthology inference is tricky and that's why the <https://questfororthologs.org> consortium has been comparing **graph-based** an…
Comment: Manual Polygenic Risk Score calculation
by
ashaneev07
▴ 20
Hello, Did you calculate the score successfully? I'm also facing issues with prs score calculation.
Answer: NCBI vs Ensembl - Ortholog genes Information
by
liorglic
★ 1.4k
Orthology analyses are always a bit complicated and it is expected that when you use different DBs you would get different results. This is…
Comment: monocle3 dot plot by groups and each cell types
by
zx8754
11k
**monocle3** has a nice website, what have you tried? - https://cole-trapnell-lab.github.io/monocle3/docs/clustering/
Comment: Set the same Y scale for different plots
by
zx8754
11k
I think we need min/max from both datasets.
Comment: Set the same Y scale for different plots
by
zx8754
11k
Or use *range*: my_y_limits <- range(c(mtcars$cyl, mtcars$mpg)) my_y_limits # [1] 4.0 33.9
Comment: UMI-Tools knee-method has great influence on the results of white list
by
Assa Yeroslaviz
★ 1.9k
Hi @iansudbery, I have seen you're recommending to use the Alevin-fry pipeline now instead of umi_tools. But I couldn't find out, how to us…
Comment: Search within posts based on tags using the Biostars API
by
Bálint
▴ 10
That is a cool workaround and exactly what I was looking for! Thank you very much! :-)
Comment: How to use pacbio reads to join contigs
by
Wyclif
• 0
Hi, did you find the solution for this? I am new to bioinformatics here and I would like to use DBG2OLC to combine the contigs into scaffol…
Comment: polygenic risk score
by
ashaneev07
▴ 20
Can't we calculate the prs of a single patient data with respect to GWAS data for predicting the risk for particular diseases?
Traffic: 2170 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6