This is a test version of Biostars. For the public version, visit https://www.biostars.org.
1 vote
1 reply
359 views
News: Conference on environmental sustainability in research computing, in Geneva, Switzerland from 4th--8th May 2026
database r statistics
written by rakhi • rakhi
1 vote
3 replies
369 views
Bacterial community profiling using 16S rRNA nanopore sequencing
nanopore full-length microbiome emu 16s-rrna
updated by michael.ante michael.ante • written by Cedrick • Cedrick
1 vote
0 replies
134 views
Statistical test for proportion values.
deconvolution cibersortx bayesprism
written by yadavsoumya647 • yadavsoumya647
0 votes
1 reply
269 views
IsoformSwitchAnalyzeR ( Isoform switch )
isoformswitchanalyzer
updated by i.sudbery i.sudbery • written by bendakiiracha17 • bendakiiracha17
1 vote
4 replies
5.6K views
Isoform Differential Expression Analysis
rna-seq rsem deseq2 ebseq
updated by bendakiiracha17 • bendakiiracha17 • written by john • john
0 votes
1 reply
199 views
Interactions in DESeq2
deseq2
updated by swbarnes2 swbarnes2 • written by brooke.bell1299 • brooke.bell1299
0 votes
3 replies
373 views
Working with duplicates of sample for my DESeq2
deseq2 transcriptomic analysis
written by Ananya • Ananya
0 votes
8 replies
935 views
How to use GenomicsDBImport
whole genome snps sequencing ngs
updated by GenoMax GenoMax • written by ngseq • ngseq
0 votes
4 replies
432 views
Unequally distributed volcano plot
deseq2 volcanoplot differentialgeneexpression
updated by GenoMax GenoMax • written by Vinesh • Vinesh
0 votes
0 replies
179 views
Job: Position Available Bioinformatics Software Engineer - Immune Repertoire Profiling - Austin TX/Remote
bioinformatics immunology postgres agile aws
written by allovista • allovista
0 votes
1 reply
285 views
Comparing GSEA results across multiple cohorts
gsea heatmap
updated by ATpoint ATpoint • written by Picasa Picasa
0 votes
2 replies
270 views
Classification of Bioinformatics in different countries
cs bioinformatics biology
written by anasjamshed anasjamshed
0 votes
2 replies
244 views
Bulk Turtle Fasta Downloads
ncbi genomes
updated by MirianT_NCBI • MirianT_NCBI • written by skibstedm • skibstedm
0 votes
1 reply
162 views
core dumped in vg pack using gaf file
vg
updated by Jouni Sirén Jouni Sirén • written by gulin • gulin
0 votes
0 replies
91 views
Tool: RAPTOR — open-source dashboard for RNA-seq data acquisition, pooling, and meta-analysis
rna-seq python sra meta-analysis geo
written by ayehgeek • ayehgeek
3 votes
4 replies
1.3K views
Example of ClinVar pathogenic variant where the reference allele is pathogenic?
snp variant pathogenic clinvar
updated by tamerg tamerg • written by a615ebfb • a615ebfb
0 votes
3 replies
339 views
Is gaf.gz supported by vg pack and gamsort?
vg
updated by Jouni Sirén Jouni Sirén • written by gulin • gulin
0 votes
2 replies
330 views
Best methods and tools for synteny analysis for large genome (16Gb genome size) to detect chromosome translocation, inversion ?
translocation synteny inversion
updated by dthorbur dthorbur • written by Sony Nguyen • Sony Nguyen
2 votes
5 replies
461 views
Forum: What repetitive bioinformatics / biomedical research task would you automate first?
openclaw tool ai
updated by Istvan Albert Istvan Albert • written by 2364631600 • 2364631600
0 votes
0 replies
101 views
Job: Assistant, Associate, or Full Project Scientist in Neurobiology
biology ucsd higher neurobiology education
written by UCSDBioSci • UCSDBioSci
0 votes
0 replies
87 views
News: Cancer Genomics workshop
cancergenomics
written by Physalia-courses Physalia-courses
0 votes
12 replies
1.1K views
UMI distribution
umi
updated by i.sudbery i.sudbery • written by QX • QX
0 votes
4 replies
392 views
Proteomic
differential statistical expression programming biostatistic
written by Bio • Bio
2 votes
1 reply
240 views
TCGA methylation analysis starting from beta-values: recommended workflow?
methylation tcga r
updated by Zhenyu Zhang Zhenyu Zhang • written by ana • ana
0 votes
2 replies
309 views
I‘m looking for the sequence of Pfu-sso7d
pfu-sso7d
updated by GenoMax GenoMax • written by Z • Z
0 votes
4 replies
328 views
Download CHARGE CRP GWAS summary data
charge gwas crp
written by jhy • jhy
0 votes
0 replies
79 views
scRNA compositional analysis
seq sccoda scrna
written by yadavsoumya647 • yadavsoumya647
0 votes
1 reply
214 views
Tool: Open-source tool for cancer variant interpretation from VCF files
acmg cancer vcf variants
updated by Ram Ram • written by Punith • Punith
0 votes
0 replies
94 views
News: "Bioinformatic Networks" special issue
reconstruction comparison network algorithm visualization
written by jj • jj
0 votes
4 replies
482 views
IntegrateData Seurat
sctransform seurat integration st
updated by tang • tang • written by mmorillo • mmorillo
0 votes
3 replies
385 views
Low mapping in Metagenome assembly
microbiome assembly alignment metagenomics
updated by colindaven colindaven • written by avdhar • avdhar
0 votes
6 replies
614 views
Forum: Should I use AI tool after 4 year back to Bioinfo?
bioinformatic ai tool
updated by lauraashaley • lauraashaley • written by Frrch • Frrch
0 votes
0 replies
74 views
Minimum PSM count for reliable modification stoichiometry in unenriched whole proteome open search data
proteomics ptm
updated by GenoMax GenoMax • written by SWANITHA • SWANITHA
0 votes
0 replies
79 views
Lifting over with rtracklayer vs UCSC
hg38 rtracklayer ucsc hg19 liftover
updated by GenoMax GenoMax • written by _quantum_girl_ • _quantum_girl_
0 votes
0 replies
57 views
News: (Online course) Conservation Genomics - 7–10 April
conservationgenomics ne populationgenomics
written by Physalia-courses Physalia-courses
1 vote
0 replies
111 views
Tool: KaroSpace, an interactive exploration of spatial data
karospace spatial
written by Bastien Hervé Bastien Hervé
0 votes
0 replies
67 views
Need help with assessing the past trends of a genomic locus
population_genetics genome_assembly historical_demography comparative_genomics
written by pranavdatar01 • pranavdatar01
0 votes
0 replies
134 views
Job: Hiring: Senior Scientist, Translational Genetics & RWE (Human Data–Driven Drug Discovery)
rwe
written by Shicheng Guo Shicheng Guo
1 vote
6 replies
501 views
Proteomics differential expression in longitudinal data
longitudinal expression proteomics differential
updated by Gordon Smyth Gordon Smyth • written by fnepo • fnepo
3 votes
11 replies
854 views
Tool: Query different files in the big 3 clouds.
bigwig rust sam tabix
written by Andrew • Andrew
0 votes
0 replies
94 views
Prepare protein form RoseTTAFold All-Atom fail (use charmm)
md rosettafold protein all-atom prepare
written by a0968026488 • a0968026488
0 votes
0 replies
110 views
pydeseq2 DEA single factor but multiple levels
scrna-seq pydeseq2 deg dea deseq2
updated by GenoMax GenoMax • written by npont • npont
0 votes
0 replies
90 views
should I merge regions across samples in permutation testing with regioneR
permutations regioner statistics
written by eebloom • eebloom
1 vote
0 replies
1.5K views
coefficient of variation or median absolute deviation
cv wgcna mad batch-effect
updated by Theo • Theo • written by NDA • NDA
0 votes
0 replies
174 views
Job: PhD Position (Fully Funded): Population Genetics & Microbiome Bioinformatics University of Arkansas – Department of Animal Sciences Advisor: Dr. Aranyak Goswami
bioinformatics human computational genetics biology
written by aranyak111 • aranyak111
1 vote
0 replies
121 views
Tool: Free web tool: Evo 2 log-likelihood scoring for mutant sequences
arcinstitute genomics evo2 model
written by dami.gupta • dami.gupta
0 votes
1 reply
255 views
Seurat integration join split
seurat single-cell sctransform integrated-analysis
written by michaelhojungyoon • michaelhojungyoon
0 votes
3 replies
317 views
How to analyze SRA metagenomic data without downloading large files locally (Galaxy or cloud alternatives)?
metagenomics
updated by GenoMax GenoMax • written by usalamah718 • usalamah718
0 votes
0 replies
94 views
Substitution matrix for Maximum likelihood tree and ASR
asr alignment
written by mobius238 • mobius238
0 votes
3 replies
315 views
Initialization of MySQL (MariaDb) for Funannotate.
annotations fungal funannotate
written by SomeOne • SomeOne
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