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Alice
Alice
Reputation:
320
Joined:
13.5 years ago
Last seen:
5.5 years ago
Location:
USA
Latest posts by user
0 votes
1 reply
4.4K views
How to convert mutation position from gene coordinate to genome coordinate?
coordinate snp
updated by bernatgel bernatgel • written by Alice Alice
0 votes
1 reply
1 view
Comment: C: Should I replace heterozygous variants to make a consensus
written by Alice Alice
1 vote
1 reply
1 view
Answer: C: How to merge two haploid samples (vcf, or g.vcf) into a pseudo-diploid?
written by Alice Alice
1 vote
0 replies
1 view
Comment: C: Extract a subset of fasta file based on header in python
written by Alice Alice
0 votes
0 replies
1 view
Comment: C: VCF SNP analysis
written by Alice Alice
0 votes
1 reply
2.3K views
Using GFF3Writer in Biopython
biopython gff gff3 ensembl
updated by finswimmer finswimmer • written by Alice Alice
0 votes
0 replies
1 view
Comment: C: Select union of multiple-sample VCF
written by Alice Alice
3 votes
1 reply
1 view
Answer: C: Filtering a vcf based on known variants
written by Alice Alice
0 votes
0 replies
1 view
Comment: C: How to check if BAM is indel-realigned?
written by Alice Alice
1 vote
0 replies
1 view
Comment: C: Difference between Allele frequency spectrum and Joint allele frequency spectrum
written by Alice Alice
0 votes
2 replies
2.6K views
How to check if BAM is indel-realigned?
gatk indel-realignment bam alignment
written by Alice Alice
5 votes
1 reply
1 view
Answer: A: Difference between Allele frequency spectrum and Joint allele frequency spectrum
written by Alice Alice
0 votes
1 reply
1.7K views
Simulate genotype likelihoods
snp variant calling vcf
updated by Biostar Biostar • written by Alice Alice
1 vote
0 replies
0 views
Answer: A: Completely confused about terminology and what I'm actually analysing here
written by Alice Alice
1 vote
0 replies
0 views
Answer: A: Recombination rate per base per generation
written by Alice Alice
0 votes
0 replies
0 views
Comment: C: Psmc Parameters To Use
written by Alice Alice
1 vote
2 replies
8.1K views
Recombination rate per base per generation
recombination coalescence psmc ms
updated by rjwang • rjwang • written by Alice Alice
2 votes
1 reply
0 views
Comment: C: How to start analyzing next-generation DNA and RNA sequencing data?
written by Alice Alice
1 vote
1 reply
0 views
Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
written by Alice Alice
0 votes
0 replies
0 views
Comment: C: How to polarize ancestral versus derived alleles?
written by Alice Alice
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TODO: Awards