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Recent Replies
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
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Thank you Pierre, I am going to take some time to get my head around this and report back if it works.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
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Thanks for the crosspost! Just trying to get things figured out.
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To the best of my knowledge, CIBERSORT is and has always and only been available via the official website application from Stanford. Whatev…
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Update of BioLabDonkey - Version 5.6
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Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
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Pierre Lindenbaum
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cross posted: https://stackoverflow.com/questions/78462732/
> Please mind that posting the same question to multiple sites can be perceive…
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command is missing, version is missing.
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> Error: Failed to open vcf file Fixing: No such file or directory
one of your file is missing, obviously.
Check files exist using `[…
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I have forward reads that didn't require any trimming except for adapter sequence. but the reverse read file required trimming so i trimmed…
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can we not mention unpaired ? i have a reverse read file that needs a lot of trimming but forward file is usable. I don't understand how to…
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It is an indeed an old assignment question, I am doing revision and practicing answering questions for an upcoming test and just wanted to …
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I've found this code [in this site :][1] . It doesn't seem like they've shared any additional information about this in the previous line…
Comment: Correlation Analysis
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Thank you so much. I ran based on the above code and found that all gene columns have the same values, which you obtain as the average corr…
Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
use bcftools merge with --force-samples and then use jvarkit https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ to replace the no-call …
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Since all the reads that show the alternate allele have to be clipped to align there, I'd say those reads are misaligned. I would say that…
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> Here's a few lines from the head of the raw fastq
If your files are actually compressed (as their names suggest) then you should not be …
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