updated 7 hours ago by
Mohamed
•
0
•
written 8 months ago by
vincenthus
▴
70
19
votes
15
replies
2.3k
views
4
votes
10
replies
845
views
17
votes
10
replies
7.3k
views
7 follow
4
votes
9
replies
625
views
updated 8 hours ago by
marco.barr
▴
130
•
written 6 days ago by
diqixiaoyaoer
▴
20
1
vote
8
replies
444
views
updated 9 hours ago by
marco.barr
▴
130
•
written 2 days ago by
Ghada
•
0
1
vote
6
replies
352
views
3
votes
5
replies
387
views
3 hours ago by
beantkapoor16
▴
10
0
votes
5
replies
344
views
19 hours ago by
mavy
▴
10
2
votes
4
replies
362
views
2
votes
4
replies
196
views
0
votes
4
replies
112
views
16 minutes ago by
Zhenyu Zhang
★
1.2k
1
vote
4
replies
255
views
0
votes
3
replies
213
views
updated 20 hours ago by
marco.barr
▴
130
•
written 1 day ago by
Mohamed Samir
▴
20
0
votes
3
replies
1.7k
views
updated 4 hours ago by
Arthur
•
0
•
written 3.0 years ago by
giulia.trauzzi
▴
10
0
votes
3
replies
83
views
1
vote
3
replies
516
views
2
votes
3
replies
328
views
0
votes
2
replies
33
views
1
vote
2
replies
163
views
19 hours ago by
ojaswinipandey
•
0
0
votes
2
replies
65
views
0
votes
2
replies
266
views
22 hours ago by
Pedro
•
0
0
votes
2
replies
137
views
updated 32 minutes ago by
geneontologyhelp
▴
400
•
written 1 day ago by
Pegasus
▴
100
0
votes
2
replies
145
views
3 hours ago by
Bjorn
•
0
1
vote
2
replies
222
views
updated 8 hours ago by
colindaven
6.4k
•
written 1 day ago by
Dr.
•
0
0
votes
2
replies
182
views
0
votes
1
reply
91
views
updated 4 hours ago by
Nitin Narwade
★
1.6k
•
written 14 hours ago by
eae6d2e7
•
0
0
votes
1
reply
82
views
updated 9 hours ago by
Pierre Lindenbaum
161k
•
written 10 hours ago by
Peter Chung
▴
200
1
vote
1
reply
691
views
0
votes
1
reply
106
views
updated 4 hours ago by
WouterDeCoster
47k
•
written 1 day ago by
safeassli
▴
10
0
votes
1
reply
53
views
0
votes
1
reply
31
views
updated 1 hour ago by
Pierre Lindenbaum
161k
•
written 2 hours ago by
Harshita
•
0
2
votes
1
reply
51
views
0
votes
1
reply
18
views
updated 1 hour ago by
Pierre Lindenbaum
161k
•
written 1 hour ago by
mrk
•
0
0
votes
0
replies
62
views
15 hours ago by
Christopher
•
0
0
votes
0
replies
34
views
2 hours ago by
Fabio Marroni
★
3.0k
2
votes
0
replies
31
views
2 hours ago by
Rafael Soler
★
1.2k
0
votes
0
replies
117
views
updated 21 hours ago by
Ram
44k
•
written 2 days ago by
Rodolfo Adrián
•
0
0
votes
0
replies
142
views
updated 21 hours ago by
Ram
44k
•
written 1 day ago by
JorgeVallejo
▴
20
0
votes
0
replies
31
views
0
votes
0
replies
20
views
0
votes
0
replies
72
views
updated 21 hours ago by
Ram
44k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
35
views
4 hours ago by
Ayda Ecem
•
0
0
votes
0
replies
46
views
0
votes
0
replies
51
views
0
votes
0
replies
52
views
10 hours ago by
carlopecoraro2
★
2.5k
Recent Votes
Recent Locations •
All
United States, just now
United Kingdom, just now
Germany, just now
United States, just now
Germany, 3 minutes ago
United States, 6 minutes ago
United States, 6 minutes ago
Recent Awards •
All
Popular Question to
Rafael Soler
★
1.2k
Popular Question to
applepie
•
0
Popular Question to
Peter Chung
▴
200
Popular Question to
ev97
▴
20
Popular Question to
Lluís R.
★
1.2k
Recent Replies
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Shukai
•
0
Thank you Ram for the comments! Noted for future posts.
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
I am looking for diagrams, and step-by-step instructions of how to build my pipelines.
I think the github is only helpful if you are a wdl…
Comment: Where to find old version of GATK best practice
by
Zhenyu Zhang
★
1.2k
oh, this is helpful. Thanks.
Comment: Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis o
by
Ram
44k
1. You can edit your post and add relevant details. There is no need to add separate comments with relevant details especially when it's no…
Answer: Functional enrichment analysis for unique gene IDs
by
geneontologyhelp
▴
400
If you are looking at producing GO annotations, we currently only recommend InterProScan, and basically only for novel organisms or where t…
Answer: Question about samtools view flags (paired reads vs. properly paired reads)
by
Pierre Lindenbaum
161k
paired reads = the experiment was a paired end assay: each fragment was sequenced on 5' and 3', two FASTQ files are generated by the seque…
Answer: z-score of gene set
by
Matthias Zepper
4.6k
The z-score is a measure of how many standard deviations a particular data point is from the mean of a distribution. A positive z-score ind…
Answer: converting transcript IDs (Ensembl) to gene symbols in R
by
bk11
★
2.5k
You can do as following:
library(biomaRt)
# Set up the Ensembl BioMart connection
ensembl <- useEnsembl(biomart = "genes",…
Comment: How can we convert a vcf to fasta, so that I can blast some genes against that w
by
Pierre Lindenbaum
161k
well you try to use FastaAlternateReferenceMaker https://gatk.broadinstitute.org/hc/en-us/articles/360037594571-FastaAlternateReferenceMak…
Comment: z-score of gene set
by
bk11
★
2.5k
Can you please tell us what will be your propose of z-score calculation?
Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
by
DBScan
▴
300
I think I did it once, but why would you use GATK with DRAGEN gVCF files? If you have a DRAGEN, the iterative gVCF Genotyper does a much fa…
Answer: Practical Haplotype Graph v2 not finding correct paths
by
beantkapoor16
▴
10
So, I just tested it and it's performing much better now. Most of the haplotype paths are coming from the expected haplotypes (australasica…
Comment: Generating a Bed file from a Fasta file
by
Pierre Lindenbaum
161k
there is not enough information. you have to show us the command you used, a snapshot of your fasta...
Comment: Practical Haplotype Graph v2 not finding correct paths
by
beantkapoor16
▴
10
That's great. I will test it and let you know how it goes. Thank you.
Traffic: 2933 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6