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624
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how to find genes that are significantly expressed in brain cortex samples
rna-seq gene-expression
updated 28 days ago by 82k • written 29 days ago by ▴ 140
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624
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Comment: Comment: how to find genes that are significantly expressed in brain cortex samples
29 days ago by rheab1230 ▴ 140
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196
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beta coefficient improves after doing mediation analysis
coefficient mediation beta regression
8 weeks ago by rheab1230 ▴ 140
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536
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Comment: Comment: Manhattan plot for TWAS results
11 weeks ago by rheab1230 ▴ 140
5
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4
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536
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Manhattan plot for TWAS results
TWAS GWAS manhattan-plot
11 weeks ago by rheab1230 ▴ 140
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314
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Comment: Comment: How to show that correlation from one method is more significant than other meth
3 months ago by rheab1230 ▴ 140
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3
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314
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How to show that correlation from one method is more significant than other method?
p-value model-performance significance correlation
updated 3 months ago by ★ 1.4k • written 3 months ago by ▴ 140
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1
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734
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Comment: Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
6 months ago by rheab1230 ▴ 140
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1
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734
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Comment: Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
6 months ago by rheab1230 ▴ 140
1
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5
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734
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how to convert beta effect size of SNP to a statistical value to be compared across tissues
beta-effect statistics SNP multi-variate
updated 6 months ago by 3.9k • written 6 months ago by ▴ 140
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2
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529
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how to evaluate SNPs that are regulating same gene expression across multiple tissues
snp GTEx
updated 8 months ago by 3.9k • written 8 months ago by ▴ 140
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4
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1.2k
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error while installing peertools
peertools
updated 9 months ago by ★ 27k • written 2.5 years ago by ▴ 140
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0
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359
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snps being shared by gene in different tissues
mechanism shared colocalization snp tissues
10 months ago by rheab1230 ▴ 140
0
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0
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284
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how to calculate predicted expression using weights from model file
predicted-expression R predixcan
updated 10 months ago by 43k • written 10 months ago by ▴ 140
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0
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458
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How to testing of cv.glmnet model on the entire dataset rather than just training
cross-validation testing glmnet model
updated 11 months ago by 43k • written 11 months ago by ▴ 140
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1
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864
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Comment: Comment: rank SNPs after elastic net modeling
11 months ago by rheab1230 ▴ 140
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1
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864
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Comment: Comment: rank SNPs after elastic net modeling
11 months ago by rheab1230 ▴ 140
1
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5
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864
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rank SNPs after elastic net modeling
SNPs R elastic-net modeling
updated 11 months ago by ★ 1.4k • written 11 months ago by ▴ 140
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0
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368
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how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp R heatmap
updated 11 months ago by 43k • written 11 months ago by ▴ 140
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0
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1.1k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
11 months ago by rheab1230 ▴ 140
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1
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1.1k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
11 months ago by rheab1230 ▴ 140
0
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1
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1.1k
views
Comment: Comment: calculate p value and associated z score for snp-gene pair
11 months ago by rheab1230 ▴ 140
4
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6
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1.1k
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calculate p value and associated z score for snp-gene pair
snp association gene pvalue
11 months ago by rheab1230 ▴ 140
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0
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545
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Comment: Comment: how to look for interactions between different chromosomes
11 months ago by rheab1230 ▴ 140
1
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2
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545
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how to look for interactions between different chromosomes
SNP interactions Gene HiC
11 months ago by rheab1230 ▴ 140
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1
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899
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how to input bedpe file in IGV
IGV interaction input bedpe
updated 12 months ago by 161k • written 12 months ago by ▴ 140
0
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1
reply
565
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how to look at interacting SNP for a gene using Hic contact map
peak interaction contact-map Hi-C
updated 12 months ago by ▴ 40 • written 12 months ago by ▴ 140
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0
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307
views
how to calculate minor allele frequency for each snp across samples
maf snp genotype
13 months ago by rheab1230 ▴ 140
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0
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646
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Comment: Comment: how to look at interaction between SNP and gene
13 months ago by rheab1230 ▴ 140
0
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0
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347
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how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp genes
updated 13 months ago by 43k • written 13 months ago by ▴ 140
0
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2
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646
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how to look at interaction between SNP and gene
SNP Gene Hi-C
13 months ago by rheab1230 ▴ 140
0
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1
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505
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how to import hdf5 Hi-C data into R using HiTC package
hdf5 importC R HiTC
updated 14 months ago by 13k • written 14 months ago by ▴ 140
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0
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316
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how to get genomic range for hi-c datasets in hdf5 file
R hi-c contact-map genomic-ranges
updated 14 months ago by 43k • written 14 months ago by ▴ 140
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0
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313
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how to interpret hi-c heatmap hdf5 file
heatmap maps hdf5 hi-c
14 months ago by rheab1230 ▴ 140
0
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0
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322
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inquiry related to Hi-C data download
Hi-C datasets human brain-cortex interaction matrix
14 months ago by rheab1230 ▴ 140
0
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0
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901
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Comment: Comment: how to create interacting Hi-C peaks
14 months ago by rheab1230 ▴ 140
0
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0
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901
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Comment: Comment: how to create interacting Hi-C peaks
14 months ago by rheab1230 ▴ 140
0
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4
replies
901
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how to create interacting Hi-C peaks
chromatin interaction gene Hi-C
14 months ago by rheab1230 ▴ 140
0
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0
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439
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How to find association between a gene-rsid and AD
association Loci LD AD
14 months ago by rheab1230 ▴ 140
0
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0
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356
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inquiry related to same SNP for a gene across for two tissues
snp relation tissue genetics gene
14 months ago by rheab1230 ▴ 140
0
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0
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329
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chia-pet tutorial
snp gene chia-pet
14 months ago by rheab1230 ▴ 140
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0
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1.5k
views
Comment: Comment: how to use make.names commnad in r while using rbind function
14 months ago by rheab1230 ▴ 140
3
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3
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1.5k
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how to use make.names commnad in r while using rbind function
R
14 months ago by rheab1230 ▴ 140
1
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1
reply
479
views
error while submitting a Rscript job through slurm
slurm R
updated 15 months ago by 43k • written 15 months ago by ▴ 140
1
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0
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728
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Comment: Comment: installation of bioclite gives an error
15 months ago by rheab1230 ▴ 140
4
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2
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728
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installation of bioclite gives an error
R bioclite bioconductor Biocmanager
updated 12 months ago by 43k • written 15 months ago by ▴ 140
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0
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598
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Comment: Comment: difference between chip-seq and association study
15 months ago by rheab1230 ▴ 140
2
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2
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598
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difference between chip-seq and association study
association chip-seq TWAS
15 months ago by rheab1230 ▴ 140
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0
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389
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comparison of gene models across tissues
elastinet TWAS models association
16 months ago by rheab1230 ▴ 140
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1
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845
views
Comment: Comment: gwas summary statistics
16 months ago by rheab1230 ▴ 140
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