chia-pet tutorial
Hello everyone, I want to ask if there is any tutorial for chia-pet analysis for snp-gene interaction? Thank you.
snp
gene
chia-pet
• 538 views
•
link
written
by
rheab1230 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
snps being shared by gene in different tissues
written by rheab1230 •Hello everyone I want to ask I have a dataset in which I see there are snps that are shared by genes across two or …
-
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
written by rheab1230 •Hello everyone, I have a gene set file. I want to plot a distribution plot for SNP distance across different gene sets. I want to …
-
How to find association between a gene-rsid and AD
written by rheab1230 •Hello everyone, I know rs6656401 is AD loci. I did LD analysis in spleen gtex data and found LD snp pair for this rsid. I …
-
inquiry related to same SNP for a gene across for two tissues
written by rheab1230 •Hello everyone I have a question. I have a file in which some snp are shared for a particular gene across two tissues. Can anyone …
-
comparison of gene models across tissues
written by rheab1230 •Hello, I have elastic net models for 49 tissues. For certain tissues: there are some gene models that are common. I want to ask if …
-
genome browser to check SNP genome build
written by rheab1230 •Hello everyone, I have a file containing SNP. I want to take this SNP and go to genome browser to see which gene is close …
-
vcf file summary
written by rheab1230 •Hello everyone, I have vcf files for chr 1 to 22. I want to do a summary statistics for these vcf files. Like find out …
-
Download Gene Expression Data from UCSC
written by landscape95Hello everyone, I wonder is there any way to download the GTEx Gene gene expression data set with Chia-PET, human, hg19, tissue MCF7, target ESR1 …
-
Basic understanding of ChiA-Pet analysis
written by KritikaHi everyone I got one very basic questions so please help me out it may sound silly but please bear with me. I learning ChiA-Pet …
-
Software To Analyse Chromatin-Interaction Sequencing Datasets?
written by Ahdf-Lell-Kocks •<p>I am interested in knowing what software is out there to analyse chromatin-interaction sequencing datasets like those coming from genome-wide next-gen sequencing ChIA-PET protocols:</p> <p><a …