Hello everyone, I have a gtex model file, I noticed that there are several SNPs that are regulation Gene A expression in more than one …

Hello everyone, I have genotype file and gene expression file. I want to see whether three of my rsid in genotype file is associated with …

Hello everyone, I have a genotype file. ![dput(gt_df\[1:5,1:5\]) structure(list(`GTEX-1117F` = c(0L, 0L, 0L, 1L, 0L), `GTEX-111FC` = c(0L, 0L, 0L, 2L, 0L), `GTEX-1128S` = c(0L, …

Hello everyone, Does anyone know how to interpret heatmap of hi-c data. My data look like this: ![enter image description here][1] And how can I …

Hello everyone I have a question. I have a file in which some snp are shared for a particular gene across two tissues. Can anyone …

Hello everyone, I want to ask in order to do inverse quantile normalization using the gtex pipeline: https://github.com/broadinstitute/gtex-pipeline/tree/master/qtl eqtl_prepare_expression.py ${tpm_gct} ${counts_gct} ${annotation_gtf} \ ${sample_participant_lookup} ${vcf_chr_list} …

Hello, Does anyone knows how to download or get only snp from hapmap EUR population for gtex v8 models? I tried to get the snp …

Hello everyone, Does anyone know from where I can get gtex snp annotation file to download?

Hello everyone, I am trying to use snpsift to annotate my .vcf files using rsid in dbSNP. I am able to do so. But the …

Hello everyone, I have .vcf files. I have remove indels and now have only SNP. I want to update id column in .vcf file with …