More posts like this
-
how to calculate minor allele frequency for each snp across samples
written by rheab1230 15Hello everyone, I have a genotype file. ![dput(gt_df\[1:5,1:5\]) structure(list(`GTEX-1117F` = c(0L, 0L, 0L, 1L, 0L), `GTEX-111FC` = c(0L, 0L, 0L, 2L, 0L), `GTEX-1128S` = c(0L, …
-
inquiry related to Hi-C data download
written by rheab1230 15Hello, Does anyone know from where I can download Hi-C interacting matrix for human brain cortex or tissue specific matrix. I am trying to download …
-
How to find association between a gene-rsid and AD
written by rheab1230 15Hello everyone, I know rs6656401 is AD loci. I did LD analysis in spleen gtex data and found LD snp pair for this rsid. I …
-
inquiry related to same SNP for a gene across for two tissues
written by rheab1230 15Hello everyone I have a question. I have a file in which some snp are shared for a particular gene across two tissues. Can anyone …
-
genes associated with AD list
written by rheab1230 15Hello, I want to get a list of Common and rare variants associated with Alzheimer’s disease along with its genes and tissue from where this …
-
Learning Linux advance commands
written by rheab1230 15Hello everyone, I am learning linux commands. I know some basic commands line but want to advance it. Does anyone know any site or book …
-
How can I download SNPs from HapMap European populations?
written by rheab1230 15Hello, Does anyone knows how to download or get only snp from hapmap EUR population for gtex v8 models? I tried to get the snp …
-
split gtex genotype file by chromosome number
written by rheab1230 15Hello, I am trying to submit a job in michigan imputation server to get imputed dosage for gtex genotype file. But when I submit it …
-
genome browser to check SNP genome build
written by rheab1230 15Hello everyone, I have a file containing SNP. I want to take this SNP and go to genome browser to see which gene is close …
-
TWAS analysis
written by rheab1230 15Hello everyone, Does anyone know where I can learn TWAS analysis using predixscan software?