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how to create interacting Hi-C peaks

Hello everyone, I want to ask how to create a similar image from a paper. I am using 3D-genome online tool using their capture Hi-C method. But I am not able to create this kind of results. My result is coming like this: my_results Does anyone know how to do this? Thank you.

enter image description here

chromatin interaction gene hi-c
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written by rheab1230 • rheab1230

It's called Sashimi plot. You probably find it instructions in the docs of IGV.

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written by ATpoint ATpoint

thank you. i will go through it

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written by rheab1230 • rheab1230

1 answer

Years ago, I used Sushi (page 13), it was a very useful package for visualizing "interaction arcs". I think IGV is not an option when the arcs are many kb long or when you want to visualize interactions in long regions.

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written by Buffo Buffo

Thank you. I will use this package since I am more familiar with R

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written by rheab1230 • rheab1230

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