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Showing :
questions
8
votes
4
replies
2.3k
views
Implementing a naive javascript-based de Bruijn graph
debruijn
graph
javascript
algorithm
8.0 years ago by
Pierre Lindenbaum
161k
8
votes
4
replies
3.0k
views
Detecting a small set of given Intron-Exon junctions in a RNA-Seq dataset
rna-seq
exon
intron
junction
updated 8.0 years ago by
Malachi Griffith
20k • written 8.0 years ago by
Pierre Lindenbaum
161k
9
votes
6
replies
7.7k
views
6 follow
Samtofastq: Net.Sf.Picard.Picardexception: "Found N Unpaired Mates "
picard
bam
fastq
conversion
error
updated 24 months ago by
Ram
43k • written 11.1 years ago by
Pierre Lindenbaum
161k
5
votes
3
replies
3.7k
views
piping cutadapt --paired-output into bwa ? logs are written to stdout
cutadapt
updated 21 months ago by
Ram
43k • written 8.4 years ago by
Pierre Lindenbaum
161k
14
votes
3
replies
2.0k
views
Questions about GA4GH Beacons
ga4gh
beacon
updated 21 months ago by
Ram
43k • written 8.6 years ago by
Pierre Lindenbaum
161k
26
votes
12
replies
6.0k
views
Minimal CWL (Common Workflow Language) workflow from Makefile
makefile
cwl
updated 18 months ago by
Ram
43k • written 8.8 years ago by
Pierre Lindenbaum
161k
32
votes
4
replies
9.4k
views
Fastq Qualities For Solexa/Illumina
sequencing-quality
next-gen-sequencing
fastq
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Pierre Lindenbaum
161k
4
votes
4
replies
2.0k
views
[internship project] condition where BLAST > BWA.
blast
bwa
updated 16 months ago by
Ram
43k • written 8.9 years ago by
Pierre Lindenbaum
161k
8
votes
7
replies
12k
views
6 follow
Vcf-Tools : Error "Broken Vcf Header, No Column Names?'"
vcftools
vcf
perl
updated 9.1 years ago by
Anop Singh Ranawat
• 0 • written 11.7 years ago by
Pierre Lindenbaum
161k
8
votes
7
replies
3.7k
views
Rnaseq: Can I Parallelize The Tophat Step ?
rnaseq
tophat
updated 24 months ago by
Ram
43k • written 10.5 years ago by
Pierre Lindenbaum
161k
9
votes
3
replies
7.0k
views
Exome Aggregation Consortium (ExAC) database ?
exac
sql
variants
vcf
database
updated 9.3 years ago by
Brad Chapman
9.7k • written 9.3 years ago by
Pierre Lindenbaum
161k
4
votes
7
replies
2.9k
views
reads mapped in proper pair (99/147) but mapq=0 ?
mapq
bam
read
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Pierre Lindenbaum
161k
5
votes
3
replies
4.4k
views
VCF + Phylogenetic tree : how to calculate the distance between two set of samples
vcf
phylogenetic-tree
distance
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Pierre Lindenbaum
161k
2
votes
3
replies
3.1k
views
De novo assembly of a large insertion with a mapped-read seed.
ngs
denovo-assembly
structural-variation
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Pierre Lindenbaum
161k
3
votes
3
replies
2.0k
views
International Protein Index: No Entries Found
protein
sequence
fasta
updated 9.7 years ago by
Biostar
20 • written 12.1 years ago by
Pierre Lindenbaum
161k
20
votes
3
replies
12k
views
samtools 1.0 'index' : CSI index vs BAI index ?
samtools
index
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Pierre Lindenbaum
161k
5
votes
7
replies
3.6k
views
454 Coverage Quality
coverage
next-gen
sequencing
quality
updated 9.7 years ago by
Biostar
20 • written 13.6 years ago by
Pierre Lindenbaum
161k
66
votes
23
replies
11k
views
9 follow
Using Hdf5 To Store Bio-Data
hdf5
storage
database
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Pierre Lindenbaum
161k
6
votes
7
replies
4.5k
views
Joining Snpeff And Vcf
format
vcf
updated 10.1 years ago by
tranthach90
• 0 • written 12.2 years ago by
Pierre Lindenbaum
161k
6
votes
3
replies
2.6k
views
Old Version Of Bwa And Soft Clipping
bwa
updated 10.1 years ago by
Istvan Albert
100k • written 10.1 years ago by
Pierre Lindenbaum
161k
4
votes
3
replies
2.7k
views
Biodas : Can I Retrieve Some Metadata About A Segment ?
annotation
ucsc
xml
updated 10.3 years ago by
Maximilian Haeussler
★ 1.6k • written 13.3 years ago by
Pierre Lindenbaum
161k
10
votes
2
replies
6.6k
views
Initiation Codons: "Predictions" And "Alternative Initiation Codons"
translation
mutation
codon
updated 10.3 years ago by
Biostar
20 • written 13.4 years ago by
Pierre Lindenbaum
161k
3
votes
4
replies
4.6k
views
Tophat : Sam-Flag 115 = Properly-Paired + Read.Reverse + Mate.Reverse ?
tophat2
bowtie2
sam
updated 10.3 years ago by
Biostar
20 • written 10.5 years ago by
Pierre Lindenbaum
161k
4
votes
1
reply
3.2k
views
Exome Variant Server: What Are Those Gaps ?
ucsc
coverage
updated 10.3 years ago by
DG
7.3k • written 10.4 years ago by
Pierre Lindenbaum
161k
6
votes
5
replies
4.0k
views
Javascript: Searching A Pwm-Motif In A Dna Sequence
motif
updated 2.5 years ago by
Ram
43k • written 10.3 years ago by
Pierre Lindenbaum
161k
33
votes
16
replies
7.0k
views
10 follow
Short Read Aligners/ Snp Calling Comparison
next-gen
sequencing
comparison
mapping
snp
updated 10.4 years ago by
Biostar
20 • written 13.5 years ago by
Pierre Lindenbaum
161k
9
votes
5
replies
3.9k
views
Retrieving The Sequences Of The Human Snorna, Lncrna, Etc...
rna
updated 10.5 years ago by
PoGibas
5.1k • written 10.5 years ago by
Pierre Lindenbaum
161k
96
votes
26
replies
31k
views
15 follow
What Methods Do You Use For In/Del/Snp Calling?
short-read-aligner
snp
sequencing
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Pierre Lindenbaum
161k
20
votes
3
replies
17k
views
What'S The Meaning Of @Rg In Sam ?
sam
bam
next-gen
sequencing
format
updated 10.6 years ago by
Biostar
20 • written 12.9 years ago by
Pierre Lindenbaum
161k
56
votes
12
replies
12k
views
9 follow
What Are The Public Sql Servers For Bioinformatics ?
online-server
sql
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Pierre Lindenbaum
161k
2
votes
4
replies
3.3k
views
Sequencing Of Pcr Products
pcr
sequencing
primer
trimming
10.6 years ago by
Pierre Lindenbaum
161k
179
votes
51
replies
17k
views
26 follow
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen
sequencing
galaxy
updated 10.8 years ago by
sarahhunter
▴ 600 • written 13.5 years ago by
Pierre Lindenbaum
161k
5
votes
1
reply
4.0k
views
Blastn / Tblastn : Mapping The Features Of The Query To The Hit.
blast
blast+
mapping
feature
annotation
10.9 years ago by
Pierre Lindenbaum
161k
14
votes
11
replies
20k
views
6 follow
Converting Bcl To Fastq
illumina
fastq
conversion
format
updated 10.9 years ago by
Pablo Marin-Garcia
★ 2.0k • written 12.0 years ago by
Pierre Lindenbaum
161k
2
votes
1
reply
2.5k
views
Table 'N-Reads=F(Duplicate,Sample) ' How Can I Visualize This ?
visualization
duplicates
ngs
updated 11.0 years ago by
Philippe
★ 1.9k • written 11.0 years ago by
Pierre Lindenbaum
161k
7
votes
2
replies
7.7k
views
Bwa-Mem And Sam-Flag "Read Paired In Proper Pair"
bwa
updated 11.1 years ago by
lh3
33k • written 11.1 years ago by
Pierre Lindenbaum
161k
5
votes
4
replies
2.9k
views
Discrepancy Between Ncbi / Vcf And Ncbi / Html
ncbi
vcf
dbsnp
error
11.1 years ago by
Pierre Lindenbaum
161k
9
votes
10
replies
4.4k
views
Can Tophat Be Used To Find The Virus-Host Junctions ?
tophat
updated 11.2 years ago by
Mikael Huss
4.8k • written 11.2 years ago by
Pierre Lindenbaum
161k
13
votes
2
replies
9.7k
views
Samtools Mpileup Vs Pileup: Multiple Samples And Gt=0/0
samtools
bam
mpileup
updated 11.2 years ago by
Christof Winter
★ 1.0k • written 12.2 years ago by
Pierre Lindenbaum
161k
6
votes
2
replies
6.7k
views
Visualizing The Outputs Of Gatk/Depthofcoverage
gatk
depth-of-coverage
coverage
depth-of-coverage
visualization
updated 11.3 years ago by
Johan
▴ 890 • written 11.3 years ago by
Pierre Lindenbaum
161k
11
votes
2
replies
5.5k
views
Haloplex & Allele Calling
allele
calling
next-gen
samtools
gatk
duplicates
updated 11.4 years ago by
User 59
13k • written 11.4 years ago by
Pierre Lindenbaum
161k
29
votes
17
replies
6.8k
views
10 follow
Free Hosting For A Bioinformatics Web Application ?
web
server
updated 11.4 years ago by
Khader Shameer
18k • written 11.4 years ago by
Pierre Lindenbaum
161k
5
votes
7
replies
4.7k
views
Mpileup And Sam Flag 121 (Read Paired, Mate Unmapped ) [Updated]
samtools
mpileup
sam
next-gen
11.5 years ago by
Pierre Lindenbaum
161k
5
votes
4
replies
4.2k
views
How Should I Split My Bams By Chromosomes ? For Which Operations ?
bam
chromosome
next-gen
gatk
picard
updated 11.5 years ago by
Stefano Berri
4.4k • written 11.5 years ago by
Pierre Lindenbaum
161k
9
votes
5
replies
6.4k
views
[Casava] Error: Barcode Cttgta For Lane 1 Has Length 6: Expected Barcode Lenth Is 7
next-gen
illumina
updated 11.8 years ago by
Rm
8.3k • written 11.8 years ago by
Pierre Lindenbaum
161k
20
votes
9
replies
10.0k
views
Why Does Mpileup Skip My Mutation ?
mpileup
pileup
samtools
next-gen
sequencing
11.8 years ago by
Pierre Lindenbaum
161k
2
votes
6
replies
6.8k
views
Wigtobigwig: What'S Wrong With My Wig File ?
wiggle
bigwig
11.8 years ago by
Pierre Lindenbaum
161k
12
votes
3
replies
2.2k
views
Design Pattern: Comparing Alleles
allele
genotyping
algorithm
updated 11.9 years ago by
Brad Chapman
9.7k • written 11.9 years ago by
Pierre Lindenbaum
161k
12
votes
4
replies
1.7k
views
Percentage Of Successful Next Generation Sequencing Projects ?
next-gen
updated 11.9 years ago by
Istvan Albert
100k • written 11.9 years ago by
Pierre Lindenbaum
161k
9
votes
13
replies
3.2k
views
Trio: Detecting A Large De Novo Indel
bam
indel
updated 11.9 years ago by
zam.iqbal.genome
★ 1.9k • written 11.9 years ago by
Pierre Lindenbaum
161k
142 results • Page
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