Visualizing The Outputs Of Gatk/Depthofcoverage

Dear lazyweb,

do you know any tool/script to visualize the different outputs of GATK DepthOfCoverage ?

gatk depth-of-coverage coverage depth-of-coverage visualization

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updated 13.6 years ago by Johan

• written 13.6 years ago by Pierre Lindenbaum

weird there are not more options for this as common as gatk is

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written 9.8 years ago by Jeremy Leipzig

1 answer

I wrote these scripts some time ago:

https://github.com/johandahlberg/Scripts/blob/master/plottingLociVsCoverage.R

https://github.com/johandahlberg/Scripts/blob/master/plottingCumulativeCoverage.R

R really isn't my strong suite, but at least its something, and they served my purpose at the time. I would be happy to accept any pull requests to improve on them, though.

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written 13.6 years ago by Johan

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