ah yes thank you Brad, there's even a python script to load the tabix+vcf files: https://github.com/konradjk/exac_browser/blob/master/exac.py
(...) def load_variants_file(): def load_variants(sites_file, i, n, db): variants_generator = parse_tabix_file_subset([sites_file], i, n, get_variants_from_sites_vcf) try: db.variants.insert(variants_generator, w=0) except pymongo.errors.InvalidOperation: pass # handle error when variant_generator is empty
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Pierre Lindenbaum
"Dear lazyweb": Yet another indicator that Pierre *owns* BioStars :)