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Comment: Comment: How to make seperat plots in Monocle3 using combined control and treatment sampl
3 months ago by alwayshope ▴ 40
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280
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How to make separate plots in Monocle3 using combined control and treatment samples
monocle3 plot_cells
updated 3 months ago by 43k • written 3 months ago by ▴ 40
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1
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889
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Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord
maftools
updated 5 months ago by ▴ 20 • written 12 months ago by ▴ 40
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Job: Research technician and a Postdoc on pediatric leukemias at the Ding Lab of Johns HopkinsMedicine
Pediatric Postdoc Leukemias
7 months ago by alwayshope ▴ 40
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0
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352
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Job: Postdoctoral Fellow- Behavior and Circuit Neuroscience at Dr. JuarezLab of University of Maryland-Baltimore
Neuroscience Postdoc
7 months ago by alwayshope ▴ 40
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0
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443
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Job: Postdocs and postback positions in Neuroepigenomics and psychiatric at Yale
Neurogenomics Yale Postdoc Graduate
7 months ago by alwayshope ▴ 40
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0
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607
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Comment: Comment: Super long time when running RSoptSC package
7 months ago by alwayshope ▴ 40
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1
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607
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Comment: Comment: Super long time when running RSoptSC package
updated 7 months ago by 43k • written 7 months ago by ▴ 40
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4
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607
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Super long time when running RSoptSC package
RSoptSC single-cell
7 months ago by alwayshope ▴ 40
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0
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404
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Job: Two Postdoctoral Positions in Spatial Proteomics at Berlin-BUCH | Max-Delbrück-Center
spatial_proteomics Postdoc MDC_Berlin
7 months ago by alwayshope ▴ 40
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0
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407
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Comment: Comment: Is it normal if regress out the cell cycle effects but the DEGs are quite the si
7 months ago by alwayshope ▴ 40
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2
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407
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Is it normal if regress out the cell cycle effects but the DEGs are quite the similar (no big changes)
regress_out Cell_cycle Seurat
7 months ago by alwayshope ▴ 40
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0
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955
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Comment: Comment: How to display all top markers in the heatmap by DoHeatmap (Seurat) when there a
7 months ago by alwayshope ▴ 40
1
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2
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955
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How to display all top markers in the heatmap by DoHeatmap (Seurat) when there are duplicates of top marker genes for several cell clusters
DoHeatmap Seurat
7 months ago by alwayshope ▴ 40
2
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3
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1.4k
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Is there an easy to modify the subplot titles in DimPlot (Seurat)?
scRNA-seq patchwork DimPlot Seurat
updated 8 months ago by 11k • written 8 months ago by ▴ 40
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1.4k
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Comment: Comment: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
8 months ago by alwayshope ▴ 40
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0
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842
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Job: Postdoctoral Research Fellow in Single-cell Computational Epigenetics - Zhou Lab at CHOP/Upenn
Postdoc Single-cell CHOP
updated 8 months ago by 43k • written 8 months ago by ▴ 40
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0
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785
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Comment: Comment: Universitäts­klinikum Essen PhD position in neuroscience. Germany.
8 months ago by alwayshope ▴ 40
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2
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785
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Job: Universitäts­klinikum Essen PhD position in neuroscience. Germany.
UniEssen PhD
8 months ago by alwayshope ▴ 40
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0
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539
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Comment: Comment: how to filter the scRNAseq data, by percent genes expression, counts and others
8 months ago by alwayshope ▴ 40
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2
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539
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how to filter the scRNAseq data, by percent genes expression, counts and others
scRNA-seq
updated 8 months ago by ★ 16k • written 8 months ago by ▴ 40
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1
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900
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Comment: Comment: Optimal number of features to use when integrate multi samples by Seurat in sc
8 months ago by alwayshope ▴ 40
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0
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900
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Comment: Comment: Optimal number of features to use when integrate multi samples by Seurat in sc
8 months ago by alwayshope ▴ 40
3
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5
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900
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Optimal number of features to use when integrate multi samples by Seurat in scRNAseq
scRNASeq Seurat
updated 8 months ago by 43k • written 8 months ago by ▴ 40
0
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0
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328
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Any recommended tools to compare the gene-gene network
gene-gene-network
updated 8 months ago by 43k • written 8 months ago by ▴ 40
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0
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1.3k
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Comment: Comment: the distribution of log2Fc and t value are not similar for bulk RNA-seq
8 months ago by alwayshope ▴ 40
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1
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1.3k
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Comment: Comment: the distribution of log2Fc and t value are not similar for bulk RNA-seq
8 months ago by alwayshope ▴ 40
0
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0
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1.3k
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Comment: Comment: the distribution of log2Fc and t value are not similar for bulk RNA-seq
8 months ago by alwayshope ▴ 40
5
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10
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1.3k
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the distribution of log2Fc and t value are not similar for bulk RNA-seq
decoupleR RNA-seq
8 months ago by alwayshope ▴ 40
0
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1
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1.3k
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Comment: Comment: the distribution of log2Fc and t value are not similar for bulk RNA-seq
9 months ago by alwayshope ▴ 40
0
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1
reply
1.3k
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Comment: Comment: the distribution of log2Fc and t value are not similar for bulk RNA-seq
9 months ago by alwayshope ▴ 40
0
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0
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478
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Comment: Comment: Does ScaleData of S.Score and G2M.Score will reduce the cell numbers for G1, S,
9 months ago by alwayshope ▴ 40
1
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2
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478
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Does ScaleData of S.Score and G2M.Score will reduce the cell numbers for G1, S, G2M
Cell-cycle scRNAseq Seurat
9 months ago by alwayshope ▴ 40
2
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2
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568
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which conclusion can get from the cell cycle analysis of scRNAseq data
scRNAseq cell_cycle
updated 10 months ago by ▴ 170 • written 10 months ago by ▴ 40
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0
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690
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Comment: Comment: how to tell if the JackStrawPlot is good
10 months ago by alwayshope ▴ 40
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1
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690
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Comment: Comment: how to tell if the JackStrawPlot is good
10 months ago by alwayshope ▴ 40
2
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4
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690
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how to tell if the JackStrawPlot is good
scRNAseq JackStrawPlot
10 months ago by alwayshope ▴ 40
0
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0
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670
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Comment: Comment: How to choose the important clusters for RNAseq data of different groups for do
11 months ago by alwayshope ▴ 40
1
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2
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670
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How to choose the important clusters for RNAseq data of different groups for downstream analysis/annotation
RNA-seq cluster
updated 11 months ago by 43k • written 11 months ago by ▴ 40
1
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0
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773
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Comment: Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
11 months ago by alwayshope ▴ 40
3
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2
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773
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Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Expression RNAseq
11 months ago by alwayshope ▴ 40
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1.2k
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Comment: Comment: Circos plot using vcf : Mutect2 MultiSample VCF out file
11 months ago by alwayshope ▴ 40
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0
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522
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Comment: Comment: Are there any recommended tools for tumor target sequencing data downstream anal
12 months ago by alwayshope ▴ 40
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1
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522
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Are there any recommended tools for tumor target sequencing data downstream analysis
target tumor downstream compare plots
12 months ago by alwayshope ▴ 40
0
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0
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361
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how to set cutoff for the gage enrichment results value of stat.mean
enrichment gage cutoff stat.mean
12 months ago by alwayshope ▴ 40
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0
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2.1k
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Comment: Comment: Bioinformatics opportunities in Europe?
13 months ago by alwayshope ▴ 40
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0
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316
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issue on the accuracy of the phospho proteomics data
phosphoproteomics
updated 13 months ago by 43k • written 13 months ago by ▴ 40
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330
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Are any recommended tools to deal with many missing values in the phospho proteomics data matrix
limma phosphoproteomics
13 months ago by alwayshope ▴ 40
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0
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352
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Any tools for systematic downstream enrichment analysis/comparison
enrichment downtream RNAseq
13 months ago by alwayshope ▴ 40
3
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3
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809
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suprisingly high logFC using limma
high too differential limma logFC expression
updated 13 months ago by ★ 7.2k • written 13 months ago by ▴ 40
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