Are there any recommended tools for tumor target sequencing data downstream analysis
Dear experts,
Are there any recommended tools for tumor target sequencing data downstream analysis? For multi-sample mutations comparison, driver genes, etc.
Many many thanks!
target
tumor
downstream
compare
plots
• 1,222 views
•
link
written
by
alwayshope •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to choose the important clusters for RNAseq data of different groups for downstream analysis/a…
written by alwayshope •Dear experts, Could you shed some light on the choice of the clusters of genes in bulk RNAseq analysis? The mfuzz package can do cluster …
-
Are any recommended tools to deal with many missing values in the phospho proteomics data matrix
written by alwayshope •Dear guys, **Are any recommended tools to deal with many missing values in the phosphor proteomics data matrix?** When searching the net, most direct to …
-
Any tools for systematic downstream enrichment analysis/comparison
written by alwayshope •Dear guys, Are there any classic papers or tools for the downstream enrichment analysis? Say I have day1, day3, day7 each has treatment & control, …
-
Regressing on cell cycle genes in scRNA-Seq
written by oriolebaltimoreDear group members, While analyzing single cell RNA-Seq data from early stage tumor and advanced stage tumors, is it recommended to normalize the cell cycle …
-
Multi samples (Normal and Tumor) somatic SNPs identification
written by Omics data miningHi everyone I have bam files of multiples normal and tumor samples. For the efficient SNPs prediction, Its recommended to have merged multi sample vcf …
-
What are the best tools for analyzing and identifying somatic mutations?
written by gprashant17Hi, I am looking for tools to identify somatic mutations (SNPs, CNVs, indels, etc) from a tumour sample (RNA-seq) which has been aligned with the …
-
Mice driver mutations
written by Gene_MMP8I have 10 normal-tumor paired genomes of mice suffering from pancreatic cancer. I have started doing the usual NGS analysis of checking the quality of …
-
Tumor purity estimation by allele frequency of COSMIC identified somatic mutations
written by ejoffe •Hi, This is very possibly a layman question ….. I have a MAF file with sequencing data for lymphoma specimens. I have no data regarding …
-
Combined assembly analysis (short reads + long reads)
written by XC •Dear NGS Experts, I have a question about combined genome assembly. We have 75X Hiseq sequencing of an animal species genome (about 3Gb genome size) …
-
How can identify the driver genes with germline mutations ?
written by andy7v9591 •Hi all, I am working on DNA data (our own experimental data) for some cancer types of human. We only have Fastq data from normal …
Tools that may draw the comparison of the mutations overview for multi-samples, etc. Thanks!