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gprashant17
gprashant17
Reputation:
110
Joined:
7.2 years ago
Last seen:
6.7 years ago
Latest posts by user
1 vote
1 reply
5.1K views
Filtering specific columns (SAMPLE IDs) in a VCF file using BCFtools
vcf bcf snp rna-seq software error
written by gprashant17 gprashant17
0 votes
0 replies
0 views
Comment: C: Filtering out by gene and samples from VCF files
written by gprashant17 gprashant17
1 vote
2 replies
2.6K views
Filtering out by gene and samples from VCF files
vcf snp vcftools gtex gene
updated by Pierre Lindenbaum Pierre Lindenbaum • written by gprashant17 gprashant17
0 votes
1 reply
79 views
Annotating VCF files with gnomAD
gnomad rna-seq ngs alignment variants
written by gprashant17 gprashant17
1 vote
0 replies
0 views
Comment: C: Filtering significant somatic variants from a VCF file
written by gprashant17 gprashant17
1 vote
2 replies
6.0K views
Filtering significant somatic variants from a VCF file
vcf alignment rna-seq mutations ngs
written by gprashant17 gprashant17
0 votes
1 reply
2.2K views
Where can find we find dbSNP database for Human Genome GRCh38.p12
snp dbsnp rna-seq alignment vcf
updated by Bastien HervĂ© Bastien HervĂ© • written by gprashant17 gprashant17
1 vote
1 reply
1.2K views
How to create a mutation landscape from a VCF file?
vcf snp genome rna-seq
written by gprashant17 gprashant17
1 vote
0 replies
1.0K views
Reference Index and Feature Index not matching while using BaseRecalibrator
gatk snp rna-seq alignment ngs
written by gprashant17 gprashant17
0 votes
1 reply
0 views
Comment: C: Empty VCF files produced by both Mutect2 and HaplotypeCaller?
updated by Ram Ram • written by gprashant17 gprashant17
0 votes
0 replies
0 views
Comment: C: Empty VCF files produced by both Mutect2 and HaplotypeCaller?
written by gprashant17 gprashant17
0 votes
6 replies
3.4K views
Empty VCF files produced by both Mutect2 and HaplotypeCaller?
snp haplotype-caller mutect rna-seq sequencing
updated by Biostar Biostar • written by gprashant17 gprashant17
0 votes
1 reply
0 views
Comment: C: MarkDuplicates output file in GATK pipeline
written by gprashant17 gprashant17
1 vote
3 replies
1.5K views
MarkDuplicates output file in GATK pipeline
gatk rna-seq alignment bam sequencing
updated by Pierre Lindenbaum Pierre Lindenbaum • written by gprashant17 gprashant17
0 votes
1 reply
0 views
Comment: C: What are the best set of options to use while aligning using STAR?
written by gprashant17 gprashant17
1 vote
1 reply
0 views
Comment: C: What are the best set of options to use while aligning using STAR?
written by gprashant17 gprashant17
0 votes
0 replies
0 views
Comment: C: What are the best tools for analyzing and identifying somatic mutations?
written by gprashant17 gprashant17
5 votes
7 replies
7.8K views
What are the best set of options to use while aligning using STAR?
star rna-seq ngs alignment
updated by Charles Warden Charles Warden • written by gprashant17 gprashant17
0 votes
2 replies
1.5K views
What are the best tools for analyzing and identifying somatic mutations?
snp rna-seq sam bam vcf
updated by ATpoint ATpoint • written by gprashant17 gprashant17
0 votes
1 reply
0 views
Comment: C: Usage of Mutect2
written by gprashant17 gprashant17
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