Annotating VCF files with gnomAD
Hi,
I am using Mutect2 to generate VCF files from BAM files which were pre-processed using GATK's pipeline. I did not use the -germline-resource argument. Now I have the gnomAD exome variant database for GRCh38 liftover. Since I did not use this database as an argument while using Mutect2, is there any way/tool to annotate the obtained VCF files with this gnomAD database?
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What have you tried? Did you try googling "annotate vcf file with another vcf file"? Please show us you've invested effort in trying to solve the problem yourself.