How to create a mutation landscape from a VCF file?

I have a VCF file which I have obtained from an aligned BAM file, and I want to identify somatic mutations. I would like to create a mutation landscape so that I can easily compare with databases like dbSNP, COSMIC, etc.

Is there a way to do this? Or is there any other way I can use my VCF file to compare with publicly available mutation datasets?

vcf snp genome rna-seq

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written 7.1 years ago by gprashant17

What's a mutation landscape?

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written 7.1 years ago by WouterDeCoster

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