updated 8 days ago by
Fungal genetics
•
0
•
written 7.1 years ago by
ntyagi654
•
0
0
votes
4
replies
3.6k
views
2
votes
4
replies
391
views
0
votes
4
replies
274
views
0
votes
4
replies
433
views
14 days ago by
carolofharvest
▴
40
3
votes
4
replies
4.0k
views
updated 13 days ago by
chloek88
•
0
•
written 5.6 years ago by
Philipp Bayer
8.5k
0
votes
4
replies
334
views
10 days ago by
Researcher
▴
30
0
votes
4
replies
116
views
1
vote
3
replies
464
views
1
vote
3
replies
2.5k
views
updated 29 days ago by
chrchang523
10k
•
written 6.2 years ago by
Ginevra
▴
10
0
votes
3
replies
185
views
2
votes
3
replies
369
views
1
vote
3
replies
287
views
3
votes
3
replies
321
views
updated 11 days ago by
Ram
44k
•
written 11 days ago by
Omics data mining
▴
260
2
votes
3
replies
345
views
0
votes
3
replies
362
views
updated 7 days ago by
Wei-Chen Pan
•
0
•
written 10 weeks ago by
Matvii Mykhailichenko
•
0
0
votes
3
replies
226
views
updated 1 day ago by
marco.barr
▴
130
•
written 1 day ago by
Mohamed Samir
▴
20
0
votes
3
replies
294
views
updated 4 days ago by
Pierre Lindenbaum
161k
•
written 5 days ago by
saifulislam99121
•
0
3
votes
3
replies
301
views
1
vote
3
replies
349
views
27 days ago by
Art1ess
•
0
1
vote
3
replies
317
views
0
votes
3
replies
223
views
0
votes
3
replies
336
views
0
votes
3
replies
219
views
1
vote
3
replies
387
views
1
vote
3
replies
351
views
0
votes
3
replies
343
views
1
vote
3
replies
306
views
updated 18 days ago by
barslmn
★
2.2k
•
written 19 days ago by
poordumbsillyidiot
•
0
0
votes
3
replies
237
views
0
votes
3
replies
270
views
0
votes
3
replies
117
views
1
vote
3
replies
349
views
16 days ago by
Lada
▴
30
0
votes
3
replies
370
views
2
votes
2
replies
2.6k
views
0
votes
2
replies
238
views
0
votes
2
replies
131
views
2
votes
2
replies
291
views
updated 5 days ago by
Ram
44k
•
written 5 days ago by
txema.heredia
▴
130
1
vote
2
replies
216
views
0
votes
2
replies
303
views
updated 3 days ago by
anton.i.petrov
•
0
•
written 3 months ago by
Larissa
•
0
0
votes
2
replies
268
views
1 day ago by
Pedro
•
0
2
votes
2
replies
250
views
0
votes
2
replies
210
views
0
votes
2
replies
398
views
22 days ago by
Bosberg
▴
50
2
votes
2
replies
1.8k
views
updated 18 days ago by
e.r.zakiev
▴
210
•
written 3.9 years ago by
n.anuragsharma
▴
40
2
votes
2
replies
260
views
updated 18 days ago by
GenoMax
142k
•
written 18 days ago by
ahmad.sajad4541
•
0
0
votes
2
replies
172
views
11 hours ago by
Bjorn
•
0
0
votes
2
replies
319
views
0
votes
2
replies
247
views
updated 11 days ago by
Ram
44k
•
written 12 days ago by
sainavyav22
•
0
1
vote
2
replies
290
views
updated 29 days ago by
Gordon Smyth
★
7.2k
•
written 6 weeks ago by
Netanel
•
0
0
votes
2
replies
254
views
updated 13 days ago by
swbarnes2
14k
•
written 14 days ago by
ahmad.sajad4541
•
0
1
vote
2
replies
289
views
Recent Votes
Recent Locations •
All
New Zealand, just now
United States, just now
Hong Kong, just now
Montreal, Canada, 2 minutes ago
United States, 7 minutes ago
Australia, 9 minutes ago
United States, 9 minutes ago
Recent Awards •
All
Popular Question to
anasjamshed
▴
120
Popular Question to
liyong
▴
80
Scholar to
Ashutosh Pandey
12k
Popular Question to
O.rka
▴
720
Popular Question to
natasha.sernova
★
4.0k
Recent Replies
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴
20
Could share some examples for gene_ids?
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴
120
yeah but i am unable to find the link of GPL6244.soft.gz
Comment: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
> Can you send me ftp link so I can download that soft file manually?
Please find this link on your own by browsing the respective GEO ent…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴
120
Thanks . I have downloaded all other files but just have problem in
Error in downloadFile(myurl, destfile, mode = mode, quiet = TRUE)…
Answer: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
Code runs for me and finishes in seconds. Maybe some poor internet connection on your end. Just set the timeout to 9999999 and retry. If th…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
ezz3
•
0
Thanks. I was wondering if that is the case but was having some issues understanding the transanno code which is written in rust and I don…
Answer: Multi-ploid data in ANGSD and NGSadmix
by
andersdetermig
▴
20
1 ) I would not expect the haploid individuals to always cluster together but the model assumptions are violated. First of all the diploid…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
Pierre Lindenbaum
161k
"Are you using correct reference?"
may be your reference is not using the same chrM. see https://www.biostars.org/p/199796/#199803
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴
50
Could you please elaborate on what you mean by passing -L or -V, i.e. what would the appropriate argument be for -L with UnifiedGenotyper f…
Answer: Add stats to the plot
by
Ghada
•
0
It works. I have added this code
my_comparisons=list(c("HRSV", "HRSV_RBV"))
plot + stat_compare_means(method = "wilcox.test",comparis…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
LChart
3.9k
I believe UnifiedGenotyper is a locus walker that sets `emitEmptySites() = False`. As such you will not see entries for positions that have…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴
120
Basically this is my code:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
#
# pkgs <- rowna…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴
50
If that were the case, I would expect there not to be any uncalled sites in the vcf, yet there are a large number of sites with "." placeho…
Comment: Problem in getting geo file through GEOQUERY
by
bk11
★
2.5k
It just runs fine for me with just a single line of code.
library(GEOquery)
GSE1145 <- getGEO("GSE1145", GSEMatrix=TRUE)
…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
Dave Carlson
★
1.7k
I can't speak to UnifiedGenotyper, as it has been many years since GATK stopped supporting it, and I have not used it in a long time. But …
Traffic: 1897 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6