Hi, I am wondering if I could download the dot-bracket notation rna-secondary structure data for the whole human transcriptome from somewhere. I know there are …

Hello, I am currently predicting RNA structures using [RNAcofold][1]. I was wondering if any of you know a tool (preferably in R) which can be …

Hi, everyone! I need some help with forgi library for visualisation of RNA secondary structure. I'd like from dot-bracket notation with known RNA sequence to …

Hi All, For coding-non coding RNA identification (using Machine learning classifier), I would like to add features extracted from RNA secondary structure. I used RNAfold …

How is context free grammar utilised for RNA secondary structure prediction ? Is any code available that can predict the structure of input RNA sequence …

Is there a program that can convert ct files to dot bracket format? I have RNA structures in ct format and would like to extract …

Hi all, i need to draw secondary structure using **RNAplot** from command line whit **Php**. I get dot-bracket notation using **RNAcofold**, with **Php** command **exec** …

Is anybody aware of the usage of vienna-rna package? I am trying to use a utility provided by the package to convert .ct structure format …

<p>I am looking for a software which can parse the dot-bracket notation of RNA structure to element one, such as:</p> <pre><code>(((..(((........[[[[...))))))........]]]] sssbbsssppppppppssssjjjssssssppppppppssss </code></pre>

Hi Biostar! I have the secondary structure of RNA in dot bracket notation. so, now with the same dot bracket notation I need to calculate …