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questions
0
votes
1
reply
1.5k
views
snpEff and SIFT calculation
snpEff
sift
updated 9 months ago by
estpallag
▴ 10 • written 4.1 years ago by
misterie
▴ 110
0
votes
4
replies
920
views
Amplicon sequencing and unwanted amplicons
amplicon
sequencing
unwanted
4.0 years ago by
misterie
▴ 110
0
votes
1
reply
711
views
Translate amino acid mutation to the nucleotide with position in reference genome
mutation
4.3 years ago by
misterie
▴ 110
0
votes
1
reply
604
views
Number of transcript reads with given mutation
RNA-Seq
SNP
updated 4.3 years ago by
Pierre Lindenbaum
161k • written 4.3 years ago by
misterie
▴ 110
1
vote
4
replies
1.2k
views
pbalign does not produce output
pbalign
updated 4.5 years ago by
tothepoint
▴ 800 • written 5.2 years ago by
misterie
▴ 110
1
vote
0
replies
889
views
Pseudoautosomal regions in cow
PAR
pseudoautosomal
sex
updated 4.6 years ago by
Biostar
20 • written 5.2 years ago by
misterie
▴ 110
0
votes
5
replies
1.1k
views
crlmm package in R - processing the SNP6 copy number data error No arrays above quality threshold!
snp6
copy number
R
4.7 years ago by
misterie
▴ 110
16
votes
18
replies
11k
views
6 follow
Samtools problem with running (Conda)
samtools
conda
updated 4.8 years ago by
steve
★ 3.5k • written 5.2 years ago by
misterie
▴ 110
0
votes
2
replies
1.1k
views
Checking regions with high density of SNPs
high density
snps
5.0 years ago by
misterie
▴ 110
0
votes
0
replies
715
views
Test of probability of length of variation of indels
indels
test
randomness
5.0 years ago by
misterie
▴ 110
0
votes
3
replies
1.1k
views
VCF - InDels and SNPs relation
SNP
indel
VCF
updated 5.0 years ago by
Pierre Lindenbaum
161k • written 5.0 years ago by
misterie
▴ 110
5
votes
15
replies
1.9k
views
Testing uniform distribution of SNPs across chromosome
uniform
vcf
SNP
5.0 years ago by
misterie
▴ 110
0
votes
1
reply
2.3k
views
Tajima's D equation - VCFtools
tajima
vcftools
5.0 years ago by
misterie
▴ 110
0
votes
1
reply
1.3k
views
SNP absolute number or density between chromosomes
SNP
annotated
density
updated 5.1 years ago by
pltbiotech_tkarthi
▴ 180 • written 5.2 years ago by
misterie
▴ 110
2
votes
5
replies
1.3k
views
Comparison of variant distribution between chromosomes
comparison
vcf
distribution
5.2 years ago by
misterie
▴ 110
7
votes
10
replies
1.6k
views
Number of genomes sequences in NCBI
genome
ncbi
updated 5.2 years ago by
vkkodali_ncbi
★ 3.7k • written 5.2 years ago by
misterie
▴ 110
2
votes
5
replies
1.5k
views
More general annotation using snpEff
snpEff
annotation
genome
5.2 years ago by
misterie
▴ 110
0
votes
5
replies
4.5k
views
PacBio raw data trimming and cleaning
pacbio
trimming
cleaning
qc
5.3 years ago by
misterie
▴ 110
0
votes
1
reply
1.3k
views
Problem with Jannovar and downloading hg19 db
jannovar
hg19
annotation
5.3 years ago by
misterie
▴ 110
0
votes
5
replies
1.2k
views
Amplicon Sequencing samples identification
amplicon
sequencing
data
fastq
5.4 years ago by
misterie
▴ 110
1
vote
3
replies
2.2k
views
Merging 2 GFF files
gff
combine
merge
gff3
5.4 years ago by
misterie
▴ 110
10
votes
9
replies
1.6k
views
Convert two-column txt to multiple column csv
bash
python
r
conversion
updated 5.4 years ago by
cpad0112
21k • written 5.4 years ago by
misterie
▴ 110
0
votes
7
replies
3.6k
views
How to split BAM files by samples from PacBio
pacbio
bam
bax
updated 5.5 years ago by
jharting
• 0 • written 5.5 years ago by
misterie
▴ 110
1
vote
0
replies
2.2k
views
Summary statistics of VCF annotated files (snpEff)
snpEff
vcf
annotation
statistics
5.5 years ago by
misterie
▴ 110
0
votes
5
replies
2.3k
views
snpEff assigned all variants as modifier intergenic
snpeff
ngs
vcf
5.5 years ago by
misterie
▴ 110
0
votes
0
replies
918
views
Psuedoautosomal regions in reference genome
PAR
reference genome
5.8 years ago by
misterie
▴ 110
0
votes
3
replies
1.2k
views
Ambiguous position in SNPdb file and reference genome
SNP
reference
ngs
updated 5.8 years ago by
Pierre Lindenbaum
161k • written 5.8 years ago by
misterie
▴ 110
0
votes
1
reply
1.7k
views
Annotation to Btau_5.0.1
genome
cattle
annotation
updated 5.8 years ago by
h.mon
35k • written 5.8 years ago by
misterie
▴ 110
0
votes
2
replies
1.3k
views
Read group information
read group
bwa
gatk
picard
updated 5.8 years ago by
WouterDeCoster
47k • written 5.8 years ago by
misterie
▴ 110
2
votes
3
replies
2.8k
views
Per tail sequence quality fail
tile
fastqc
quality
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
misterie
▴ 110
0
votes
0
replies
2.3k
views
Per base sequence quality and per base N content
fastqc
quality
6.0 years ago by
misterie
▴ 110
0
votes
1
reply
1.2k
views
Integrated DNA and RNA sequences in expression analysis
RNA-Seq
dna-seq
updated 6.4 years ago by
ori
▴ 50 • written 6.4 years ago by
misterie
▴ 110
0
votes
2
replies
1.5k
views
RNA-Seq and WGS analysis applied in genes expression
wgs
RNA-Seq
gene
expression
6.4 years ago by
misterie
▴ 110
0
votes
9
replies
3.9k
views
Number of SNPs in VCF
SNP
vcftools
updated 6.4 years ago by
Russ
▴ 500 • written 6.4 years ago by
misterie
▴ 110
0
votes
9
replies
2.4k
views
VCF with SNP- count number of 100% missing genotypes
vcf
SNP
updated 6.4 years ago by
Pierre Lindenbaum
161k • written 6.4 years ago by
misterie
▴ 110
0
votes
1
reply
5.3k
views
Cluster analysis for SNPs data in R
SNP
cluster
analysis
R
6.7 years ago by
misterie
▴ 110
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