Integrated DNA and RNA sequences in expression analysis

Question

[misterie]

Hi,

How to integrate a dna (WGS) and rna (RNA-seq) in genes expression analysis. I have three individuals with their whole-genome sequences (3 samples) and moreover I would like to get their transcriptome sequences from their 2 tissues (2 x 3 samples).

How to use DNA and RNA together to analysis level of expression?

[ori]

What is the organism?
Is not the genome of the organism has been determined?

We often use only RNA-Seq data to analyze gene expression,
because molecules expressed from genes are RNA.

Would you tell us why you have sequenced genome DNA for expression analysis?