Translate amino acid mutation to the nucleotide with position in reference genome
Hi
I would like to use samtools view to extract reads that overlap position of given mutation. Unfortunately I have information about mutations of ESR1 in the amino acid code, like: Y541S and D542G. How can I use this information to extract SNV mutations from my BAM files?
Thanks.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Looking for an mpileup version for peptide fasta.
written by Maorkn •
-
Extracting Position-specific di-amino acid propensity(PSTAAP) features
written by suresh.wrc •
-
Number of transcript reads with given mutation
written by misterie
-
VEP output and stop gain mutation
written by seta
-
Extracting sequence, not reads, by position from bam
written by geneware •
-
Extract specific nucleotide AND total read information (tags) from BAM
written by Roman Hillje •
-
For bam and mutation signature I need coverage and number of observations
written by kulvait
-
AA position to genomic location
written by xcalle91 •
-
Convertion Of Mutation Names And Amino Acid Changes To Rs
written by Vova Naumov
-
Batch Search Effect Of A Snp On Protein (Conserved) Domain
written by Stephan
duplicate: Amino Acid Change To Genomic Location , Convert Amino Acid Change To Chromosomal Snp Coordinate ; How to find the chromosomal coordinate of a mutation in a gene? ; Finding A Mutation Coordinate From Mutation Nomenclature And Gene Name ; ...