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19
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11
replies
14k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 6 days ago by ★ 3.8k • written 10.8 years ago by ▴ 920
0
votes
0
replies
396
views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer protein SELEX
9 weeks ago by J.F.Jiang ▴ 920
0
votes
1
reply
510
views
tumor fraction estimation and fragment size plot using sWGS data
ctDNA NGS WGS
updated 5 months ago by 43k • written 18 months ago by ▴ 920
0
votes
2
replies
601
views
BCR/TCR analysis using target capture sequencing data
capture ngs TCR BCR
11 months ago by J.F.Jiang ▴ 920
0
votes
5
replies
953
views
combine/merge closet variants into one from mutect2
variants mutect2 merge gatk
updated 11 months ago by 100k • written 11 months ago by ▴ 920
0
votes
4
replies
709
views
BCL2 fusions not detected in RNA level
fusion RNA BCL2
updated 12 months ago by 82k • written 12 months ago by ▴ 920
0
votes
0
replies
413
views
multiplex pcr PRIMER
sequence primer multiplex pcr
13 months ago by J.F.Jiang ▴ 920
0
votes
0
replies
327
views
heterozygosity control from NGS data
heterozygosity NGS SNP
20 months ago by J.F.Jiang ▴ 920
1
vote
3
replies
905
views
tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 2.1 years ago by ▴ 550 • written 2.1 years ago by ▴ 920
0
votes
1
reply
689
views
hgvs annotation from VCF
VCF HGVS annotation
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 920
0
votes
0
replies
388
views
any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
2.2 years ago by J.F.Jiang ▴ 920
3
votes
10
replies
8.5k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller GATK
updated 27 days ago by 43k • written 6.5 years ago by ▴ 920
0
votes
0
replies
816
views
genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
3.3 years ago by J.F.Jiang ▴ 920
0
votes
4
replies
997
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 3.4 years ago by 20 • written 3.4 years ago by ▴ 920
0
votes
0
replies
765
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
3.5 years ago by J.F.Jiang ▴ 920
0
votes
0
replies
657
views
Max mutation allele frequency against tumor purity
tumor AF PURITY
3.7 years ago by J.F.Jiang ▴ 920
2
votes
4
replies
969
views
HPV EBV typing from cancer genome data
HPV EBV NGS
updated 3.7 years ago by ★ 2.9k • written 3.7 years ago by ▴ 920
32
votes
12
replies
23k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 3.8 years ago by 20 • written 10.3 years ago by ▴ 920
0
votes
1
reply
1.0k
views
LOH segment inferring from WES data for germline sample
LOH WES
4.0 years ago by J.F.Jiang ▴ 920
1
vote
5
replies
2.2k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 4.1 years ago by ★ 2.9k • written 4.1 years ago by ▴ 920
1
vote
1
reply
695
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 4.2 years ago by 87k • written 4.3 years ago by ▴ 920
2
votes
5
replies
2.7k
views
remove primer sequences from BAM file
bam primer
updated 4.3 years ago by • 0 • written 5.7 years ago by ▴ 920
0
votes
2
replies
994
views
convenient tools to collect target mapping metrics
target mapping
updated 4.3 years ago by 20 • written 4.4 years ago by ▴ 920
0
votes
0
replies
1.1k
views
calculate MSI STATUS using predefined MSI loci
MSI msisensor
4.5 years ago by J.F.Jiang ▴ 920
2
votes
5
replies
1.5k
views
CNV analysis for tumor panel
CNV
updated 4.8 years ago by ★ 2.8k • written 4.8 years ago by ▴ 920
1
vote
5
replies
2.9k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 4.8 years ago by ▴ 90 • written 6.7 years ago by ▴ 920
0
votes
2
replies
1.4k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 5.4 years ago by 20 • written 6.4 years ago by ▴ 920
3
votes
3
replies
2.2k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 5.5 years ago by 11k • written 6.4 years ago by ▴ 920
0
votes
2
replies
1.8k
views
autosomal ancestry inference
GWAS ancestry
updated 5.7 years ago by 87k • written 5.7 years ago by ▴ 920
0
votes
1
reply
1.7k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype NGS freebayes
updated 6.4 years ago by • 0 • written 6.6 years ago by ▴ 920
0
votes
2
replies
1.7k
views
extract region bam
bam region
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 920
0
votes
6
replies
1.5k
views
Fasted method to genotype given SNPs from NGS data
genotype SNP NGS
6.5 years ago by J.F.Jiang ▴ 920
0
votes
0
replies
1.2k
views
get CDS cordinates for genes, excluding UTR
CDS gene
6.5 years ago by J.F.Jiang ▴ 920
4
votes
1
reply
3.6k
views
Genetic rsisk score, polygenic risk score
GRS PRS
updated 6.6 years ago by ▴ 20 • written 8.2 years ago by ▴ 920
0
votes
4
replies
1.4k
views
allelic unbalance for multiplex PCR based amplicon data
allelic multiplex PCR amplicon
updated 6.6 years ago by 87k • written 6.6 years ago by ▴ 920
5
votes
9
replies
3.5k
views
6 follow
any tools to get clean reads for illumina reads
sequence clean reads
updated 2.7 years ago by • 0 • written 6.8 years ago by ▴ 920
0
votes
2
replies
1.3k
views
variant calling discondordance between same sample between two run
gatk disconcordance abratio
6.8 years ago by J.F.Jiang ▴ 920
1
vote
4
replies
3.8k
views
primer design using BLASTn
primer blast
updated 20 months ago by 43k • written 8.5 years ago by ▴ 920
0
votes
0
replies
1.3k
views
Heritability of complex trait
heritability
updated 7.1 years ago by 20 • written 7.3 years ago by ▴ 920
7
votes
7
replies
3.3k
views
Ld Mapping Using A ~30G File With Perl Script
ld perl
updated 7.4 years ago by 20 • written 11.5 years ago by ▴ 920
0
votes
0
replies
1.6k
views
how to define the risk level based on wgrs profile
wgrs risk genetic
7.6 years ago by J.F.Jiang ▴ 920
0
votes
3
replies
2.3k
views
marker information for cancer that have been accessed by FDA
marker FDA cancer
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 920
19
votes
12
replies
18k
views
8 follow
How To Plot Clustered Mutation Profiles Using Tcga Mutation Data
mutation tcga
updated 2.0 years ago by 43k • written 10.8 years ago by ▴ 920
6
votes
2
replies
10k
views
How To Convert Hapmap Genotypes Data To Plink Ped&Map Format
linkage hapmap plink
updated 8.2 years ago by 20 • written 12.9 years ago by ▴ 920
1
vote
3
replies
1.8k
views
CYP2D6 alleles determination
CYP2D6
updated 21 months ago by 43k • written 8.4 years ago by ▴ 920
0
votes
3
replies
4.5k
views
primer trimming tools
primer trimming
8.5 years ago by J.F.Jiang ▴ 920
0
votes
2
replies
2.3k
views
getting base count (coverage) based on BAM file with strand information
bam strand
updated 20 months ago by 43k • written 8.6 years ago by ▴ 920
2
votes
6
replies
3.5k
views
obtain a simulated bam file for variants on existed bam file
simulated variant bam
updated 20 months ago by 43k • written 8.6 years ago by ▴ 920
2
votes
5
replies
2.4k
views
database of genetic alternations for inherited cancer
genetic cancer database
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 920
0
votes
3
replies
2.7k
views
fastest method to get potential amplicons based on paired-primers
primer amplicon
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 920
119 results • Page 1 of 3
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