I am very interested in ancestry inference.
- autosomal ancestry
I've followed the tutorial from https://github.com/pcgoddard/Burchardlab_Tutorials/wiki/ADMIXTURE#popfile.
However, decision on cluster information K is quite confusing.
For example, there are already 12 populations among my data. How can I train these data so that I can fully separate the populations.
- Y haplogroup inference
yhaplo https://github.com/23andMe/yhaplo/ offered by 23andme can do this, however, the ISOGG in this repo is too old. And the author did not update them more. So I am wondering if there is any other similar tool that can predict the haplogroup as well as building the ISOGG tree myself.